RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
---|---|
Locus Name | LOC_Os09g27420.1 View Network Show in Genome Browser |
Other Names | Os09g0446800 |
Description | formate--tetrahydrofolate ligase, putative, expressed |
Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 16654464-16658667 Nucleotide Length: 2124 |
Protein-coding | LOC_Os09g27420 |
Gene Ontology Classification | ||||
---|---|---|---|---|
GO | Name | Type | Code | |
GO:0008150 | biological_process | Biological Process | IEA | |
GO:0009058 | biosynthetic process | Biological Process | IEA | |
GO:0009987 | cellular process | Biological Process | IEA | |
GO:0005488 | binding | Molecular Function | IEA | |
GO:0003824 | catalytic activity | Molecular Function | IEA | |
GO:0000166 | nucleotide binding | Molecular Function | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0005576 | extracellular region | Cellular Component | IEA | |
GO:0005886 | plasma membrane | Cellular Component | IEA | |
GO:0009536 | plastid | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
---|---|
Upstream Genes | LOC_Os08g45010 LOC_Os04g51630 LOC_Os08g03640 LOC_Os03g38000 LOC_Os01g67134 LOC_Os03g56800 LOC_Os07g10350 LOC_Os08g13690 LOC_Os03g18410 LOC_Os05g38520 LOC_Os01g62350 More.. |
Downstream Genes | LOC_Os09g39910 LOC_Os11g04070 LOC_Os12g03880 LOC_Os11g01510 LOC_Os11g06750 LOC_Os12g07010 LOC_Os12g01520 LOC_Os12g36950 LOC_Os10g10244 LOC_Os09g29190 LOC_Os10g41470 More.. |
Pathways | |
---|---|
KEGG Pathways | rn00670 rn00720 rn01100 rn01120 |
Metacyc Pathways | 1CMET2-PWY PWY-3841 PWY-2161 PWY-2201 PWY-3742 |
Database Links | |
---|---|
Gramene | LOC_Os09g27420.1 |
Rice Genome Annotation | LOC_Os09g27420.1 |
Ricechip | LOC_Os09g27420.1 |
KEGG | osa:4347204 dosa:Os09t0446800-01 |
Entrez-Gene | 4347204 |