RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g31180.1 View Network Show in Genome Browser |
| Other Names | Os09g0485900 |
| Description | ribosomal protein L6, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 18751895-18754232 Nucleotide Length: 573 |
| Protein-coding | LOC_Os09g31180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g04750 LOC_Os03g40180 LOC_Os05g19370 LOC_Os07g10720 LOC_Os02g27760 LOC_Os02g14059 LOC_Os04g52361 LOC_Os05g11710 LOC_Os01g10820 LOC_Os04g42380 LOC_Os06g35730 More.. |
| Downstream Genes | LOC_Os10g32820 LOC_Os11g29190 LOC_Os12g38000 LOC_Os09g32976 LOC_Os12g21798 LOC_Os10g08930 LOC_Os11g11390 LOC_Os10g27174 LOC_Os10g41470 LOC_Os11g05562 LOC_Os11g38959 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g31180.1 |
| Rice Genome Annotation | LOC_Os09g31180.1 |
| Ricechip | LOC_Os09g31180.1 |
| KEGG | osa:4347422 dosa:Os09t0485900-01 |
| Entrez-Gene | 4347422 |