RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g39500.1 View Network Show in Genome Browser |
| Other Names | Os09g0568400 |
| Description | ubiquitin fusion protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22692667-22694885 Nucleotide Length: 390 |
| Protein-coding | LOC_Os09g39500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g50990 LOC_Os02g47140 LOC_Os09g08430 LOC_Os05g11710 LOC_Os01g10820 LOC_Os03g46490 LOC_Os02g14059 LOC_Os06g35730 LOC_Os01g59990 LOC_Os07g12250 LOC_Os05g39960 More.. |
| Downstream Genes | LOC_Os11g29190 LOC_Os10g32820 LOC_Os10g32920 LOC_Os12g03090 LOC_Os11g03400 LOC_Os11g24610 LOC_Os12g38000 LOC_Os10g08930 LOC_Os10g27190 LOC_Os11g05562 LOC_Os12g03880 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g39500.1 |
| Rice Genome Annotation | LOC_Os09g39500.1 |
| Ricechip | LOC_Os09g39500.1 |
| KEGG | osa:4347896 dosa:Os09t0568400-01 |
| Entrez-Gene | 4347896 |