RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os10g25780.1 View Network Show in Genome Browser
Other Names	Os10g0397400
Description	FAD-linked oxidoreductase protein, putative, expressed
Gene Attributes	Chromosome: Chr10 CDS Coordinates (5'-3'): 13359545-13363225 Nucleotide Length: 1770
Protein-coding	LOC_Os10g25780

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0016049	cell growth	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0005773	vacuole	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g42520 LOC_Os08g35090 LOC_Os03g12910 LOC_Os04g38310 LOC_Os09g31970 LOC_Os08g40180 LOC_Os03g50810 LOC_Os01g55610 LOC_Os05g32270 LOC_Os04g57800 LOC_Os08g35860 More..
Downstream Genes	LOC_Os10g41310 LOC_Os12g38140 LOC_Os11g30430 LOC_Os12g01370 LOC_Os11g01340 LOC_Os10g26670 LOC_Os10g37240 LOC_Os12g43363

miRNA Regulations
miRNAs	osa-miR167a-3p

Pathways
KEGG Pathways	rn00100 rn01100 rn01110

Database Links
Gramene	LOC_Os10g25780.1
Rice Genome Annotation	LOC_Os10g25780.1
Ricechip	LOC_Os10g25780.1
KEGG	osa:4348555 dosa:Os10t0397400-01
Entrez-Gene	4348555