RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g32970.1 View Network Show in Genome Browser |
| Other Names | Os10g0467600 |
| Description | eukaryotic translation initiation factor, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 17258166-17261578 Nucleotide Length: 621 |
| Protein-coding | LOC_Os10g32970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g36940 LOC_Os03g15590 LOC_Os09g02700 LOC_Os06g48750 LOC_Os04g42270 LOC_Os02g05330 LOC_Os01g73880 LOC_Os03g60400 LOC_Os01g61814 LOC_Os02g57540 LOC_Os07g03230 More.. |
| Downstream Genes | LOC_Os11g24610 LOC_Os10g41470 LOC_Os10g41960 LOC_Os12g31380 LOC_Os12g03880 LOC_Os11g04070 LOC_Os11g05562 LOC_Os12g03090 LOC_Os11g03400 LOC_Os11g11390 LOC_Os12g05430 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g32970.1 |
| Rice Genome Annotation | LOC_Os10g32970.1 |
| Ricechip | LOC_Os10g32970.1 |
| KEGG | osa:4348852 dosa:Os10t0467600-01 |
| Entrez-Gene | 4348852 |