RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g35550.1 View Network Show in Genome Browser |
| Other Names | Os10g0498600 |
| Description | pre-mRNA-processing factor 6, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 19009680-19014274 Nucleotide Length: 3120 |
| Protein-coding | LOC_Os10g35550 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01740 LOC_Os03g13760 LOC_Os02g01250 LOC_Os03g53220 LOC_Os09g07500 LOC_Os07g04850 LOC_Os05g07050 LOC_Os02g37430 LOC_Os04g39444 LOC_Os03g50850 LOC_Os09g20590 More.. |
| Downstream Genes | LOC_Os11g43620 LOC_Os12g38380 LOC_Os12g42140 LOC_Os12g18880 LOC_Os12g37370 LOC_Os10g39120 LOC_Os11g14430 LOC_Os11g08940 LOC_Os12g44390 LOC_Os11g41820 LOC_Os11g19220 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g35550.1 |
| Rice Genome Annotation | LOC_Os10g35550.1 |
| Ricechip | LOC_Os10g35550.1 |
| KEGG | osa:4349020 dosa:Os10t0498600-01 |
| Entrez-Gene | 4349020 |