RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g42950.1 View Network Show in Genome Browser |
| Other Names | Os10g0580300 |
| Description | cyclin-dependent kinase E-1, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 23148730-23153260 Nucleotide Length: 1428 |
| Protein-coding | LOC_Os10g42950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g32680 LOC_Os09g35920 LOC_Os06g11370 LOC_Os04g56640 LOC_Os03g07080 LOC_Os02g05630 LOC_Os04g37904 LOC_Os05g45420 LOC_Os08g13930 LOC_Os01g62840 LOC_Os04g56450 More.. |
| Downstream Genes | LOC_Os12g41180 LOC_Os11g39670 LOC_Os12g38000 LOC_Os12g01190 LOC_Os12g39070 LOC_Os11g35390 LOC_Os11g13820 LOC_Os11g29400 LOC_Os12g44150 LOC_Os11g26910 LOC_Os11g42160 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g42950.1 |
| Rice Genome Annotation | LOC_Os10g42950.1 |
| Ricechip | LOC_Os10g42950.1 |
| KEGG | osa:4349519 dosa:Os10t0580300-01 |
| Entrez-Gene | 4349519 |