RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g07060.1 View Network Show in Genome Browser |
| Other Names | Os12g0168400 |
| Description | chaperone protein dnaJ, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 3455589-3463158 Nucleotide Length: 1260 |
| Protein-coding | LOC_Os12g07060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g53420 LOC_Os03g02260 LOC_Os03g16920 LOC_Os05g38530 LOC_Os01g62290 LOC_Os03g16860 LOC_Os03g60620 LOC_Os11g47760 LOC_Os09g31486 LOC_Os01g08560 LOC_Os08g25090 More.. |
| Downstream Genes | LOC_Os12g38180 LOC_Os12g14070 LOC_Os12g41110 LOC_Os12g17070 LOC_Os12g43600 LOC_Os12g27070 LOC_Os12g30540 LOC_Os12g31370 LOC_Os12g31800 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5533 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g07060.1 |
| Rice Genome Annotation | LOC_Os12g07060.1 |
| Ricechip | LOC_Os12g07060.1 |
| KEGG | osa:4351608 dosa:Os12t0168400-01 |
| Entrez-Gene | 4351608 |