RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g21798.1 View Network Show in Genome Browser |
| Other Names | Os12g0406200 |
| Description | 40S ribosomal protein S3a, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 12270380-12274370 Nucleotide Length: 783 |
| Protein-coding | LOC_Os12g21798 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g01870 LOC_Os03g37970 LOC_Os06g02510 LOC_Os07g42950 LOC_Os07g10660 LOC_Os05g30530 LOC_Os01g19840 LOC_Os06g35730 LOC_Os02g14059 LOC_Os05g28750 LOC_Os03g27260 More.. |
| Downstream Genes | LOC_Os12g38000 LOC_Os12g32380 LOC_Os12g41400 LOC_Os12g31380 LOC_Os12g25710 LOC_Os12g32240 LOC_Os12g42260 LOC_Os12g37560 LOC_Os12g39070 LOC_Os12g34510 LOC_Os12g42370 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g21798.1 |
| Rice Genome Annotation | LOC_Os12g21798.1 |
| Ricechip | LOC_Os12g21798.1 |
| KEGG | osa:4352048 dosa:Os12t0406200-01 |
| Entrez-Gene | 4352048 |