RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g25710.1 View Network Show in Genome Browser |
| Other Names | Os12g0443700 |
| Description | bifunctional aminoacyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 14897145-14904687 Nucleotide Length: 1533 |
| Protein-coding | LOC_Os12g25710 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g42560 LOC_Os05g05840 LOC_Os08g19850 LOC_Os03g10190 LOC_Os01g67134 LOC_Os11g04070 LOC_Os04g02820 LOC_Os12g03880 LOC_Os09g32976 LOC_Os08g23710 LOC_Os02g32030 More.. |
| Downstream Genes | LOC_Os12g29660 LOC_Os12g36950 LOC_Os12g38000 LOC_Os12g42370 LOC_Os12g32380 LOC_Os12g43100 LOC_Os12g34860 LOC_Os12g38310 LOC_Os12g39860 LOC_Os12g42150 LOC_Os12g43830 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g25710.1 |
| Rice Genome Annotation | LOC_Os12g25710.1 |
| Ricechip | LOC_Os12g25710.1 |
| KEGG | osa:4352148 dosa:Os12t0443700-01 |
| Entrez-Gene | 4352148 |