RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g34510.1 View Network Show in Genome Browser |
| Other Names | Os12g0530000 |
| Description | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 20888185-20889121 Nucleotide Length: 417 |
| Protein-coding | LOC_Os12g34510 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os07g36500 LOC_Os05g39050 LOC_Os05g38740 LOC_Os04g49420 LOC_Os03g02780 LOC_Os02g45940 LOC_Os01g61920 LOC_Os01g62230 More.. |
| Downstream Genes | LOC_Os12g39070 LOC_Os12g43100 LOC_Os12g42370 LOC_Os12g41400 LOC_Os12g39860 LOC_Os12g38000 LOC_Os12g44150 LOC_Os12g35030 LOC_Os12g40130 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g34510.1 |
| Rice Genome Annotation | LOC_Os12g34510.1 |
| Ricechip | LOC_Os12g34510.1 |
| KEGG | osa:4352398 dosa:Os12t0530000-01 |
| Entrez-Gene | 4352398 |