RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g35580.1 View Network Show in Genome Browser |
| Other Names | Os12g0541000 |
| Description | riboflavin synthase alpha chain, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 21637135-21639085 Nucleotide Length: 915 |
| Protein-coding | LOC_Os12g35580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g30800 LOC_Os01g16190 LOC_Os11g40140 LOC_Os02g36340 LOC_Os05g38570 LOC_Os06g46380 LOC_Os09g02284 LOC_Os07g36090 LOC_Os03g02600 LOC_Os04g09810 LOC_Os02g27340 More.. |
| Downstream Genes | LOC_Os12g38000 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00740 rn01100 |
| Metacyc Pathways | RIBOSYN2-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g35580.1 |
| Rice Genome Annotation | LOC_Os12g35580.1 |
| Ricechip | LOC_Os12g35580.1 |
| KEGG | osa:4352436 dosa:Os12t0541000-01 |
| Entrez-Gene | 4352436 |