RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
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Locus Name | LOC_Os12g38180.1 View Network Show in Genome Browser |
Other Names | Os12g0569700 |
Description | heat shock cognate 70 kDa protein 2, putative, expressed |
Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 23442170-23447194 Nucleotide Length: 648 |
Protein-coding | LOC_Os12g38180 |
Gene Ontology Classification | ||||
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GO | Name | Type | Code | |
GO:0008150 | biological_process | Biological Process | IEA | |
GO:0009987 | cellular process | Biological Process | IEA | |
GO:0009791 | post-embryonic development | Biological Process | IEA | |
GO:0019538 | protein metabolic process | Biological Process | IEA | |
GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
GO:0006950 | response to stress | Biological Process | IEA | |
GO:0000166 | nucleotide binding | Molecular Function | IEA | |
GO:0005515 | protein binding | Molecular Function | IEA | |
GO:0005618 | cell wall | Cellular Component | IEA | |
GO:0005575 | cellular_component | Cellular Component | IEA | |
GO:0005737 | cytoplasm | Cellular Component | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA | |
GO:0005576 | extracellular region | Cellular Component | IEA | |
GO:0016020 | membrane | Cellular Component | IEA | |
GO:0005730 | nucleolus | Cellular Component | IEA | |
GO:0005634 | nucleus | Cellular Component | IEA | |
GO:0005886 | plasma membrane | Cellular Component | IEA | |
GO:0009536 | plastid | Cellular Component | IEA | |
GO:0005840 | ribosome | Cellular Component | IEA | |
GO:0005773 | vacuole | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
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Upstream Genes | LOC_Os12g07060 LOC_Os06g02620 LOC_Os02g43930 LOC_Os04g46390 LOC_Os09g32050 LOC_Os05g26926 LOC_Os05g26902 LOC_Os05g46620 LOC_Os03g44620 LOC_Os01g50700 LOC_Os01g32870 More.. |
Downstream Genes | LOC_Os12g41820 LOC_Os12g42440 |
miRNA Regulations | |
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miRNAs | osa-miR5517 osa-miR5817 |
Reference | |
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PubMed | 19135278 22321692 |
Database Links | |
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Gramene | LOC_Os12g38180.1 |
Rice Genome Annotation | LOC_Os12g38180.1 |
Ricechip | LOC_Os12g38180.1 |
KEGG | osa:9268687 dosa:Os12t0569700-03 |
Entrez-Gene | 9268687 |