Programme -- C3 2011

C3'2011
2011年"芯片、计算机、作物"学术研讨会
2011 International Summer School on Chips, Computers and Crops
September 17^th to 23^th, 2011
Huazhong Agricultural University, Wuhan, China

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Programme

Programme

Saturday 17^th September 2011

Registration
Center for International Academic Exchanges，Huazhong Agricultural University
Computer Lab: Yifu building A406
Workshop: Room 129, Jiyin building (the building of National Key Laboratory of Crop Genetic Improvement)

Sunday 18^th September 2011

Tour

Monday 19^th September 2011

08:30~09:00 Introduction: Ling-Ling Chen & Andrew Harrison
An overview of what needs to be done at the school and the expected work load on each day.
Team grouping
Section 1 (Lectures)
09:00~10:15 Lecture 1
Plant transcriptomics.
Lecturer: Sean May, Nottingham University, UK
10:30~11:45 Lecture 2
Plant transcriptomics.
Lecturer: Sean May, Nottingham University, UK
12:00~13:30 Lunch
Section 2 (Practical)
14:00~17:00 Practice 1
R/Bioconductor introduction.
Practical: Hugh Shanahan, London University, UK; Dijun Chen, Huazhong Agricultural University / Zhejiang University, China
17:30~ Dinner

Tuesday 20^th September 2011

Section 3 (Lectures)

09:00~10:15 Lecture 3
Associative methods in System Biology.
Lecturer: Hugh Shanahan, London University, UK
10:30~11:45 Lecture 4
Correlations & Networks.
Lecturer: Hugh Shanahan, London University, UK
12:00~13:30 Lunch
Section 4 (Practical)
13:30~17:00 Practice 2
To use R/Bioconductor to analyse data (1).
Practical: Hugh Shanahan, London University, UK; Dijun Chen, Huazhong Agricultural University / Zhejiang University, China
17:30~ Dinner

Wednesday 21^th September 2011

Section 5 (Lectures)

09:00~10:30 Lecture 5
Affymetrix?GeneChips.
Lecturer: Andrew Harrison, Essex University, UK
10:50~11:30 Lecture 6
Physics?and?biases?in?technologies.
Lecturer: Andrew Harrison, Essex University, UK
12:00~13:30 Lunch
Section 6 (Practical)
13:30~17:00 Practice 3
To use R/Bioconductor to analyse data (2).
Practical: Hugh Shanahan, London University, UK; Dijun Chen, Huazhong Agricultural University / Zhejiang University, China
17:30~ Dinner

Thursday 22^th September 2011

Section 7 (Chair: Ming Chen & Sean May)

08:30~09:10
Complex quantitative traits dissection in maize using genome wide association study.
Speaker: Jian-Bing Yan, Huazhoong Agricultural University, China
09:10~9:50 Lecture 3
Large-scale Protein Identification via Mass Spectrometry and the Data Analysis.
Speaker: Ruixiang Sun, Institute of Computing Technology, CAS, China
09:50~10:30
Initial aggregation of amyloidogenic peptides studied by molecular dynamics simulations.
Speaker: Yuguang Mu, Nanyang Technological University, Singapor
10:30~10:50
Coffee/Tea break
10:50~11:30
Identifying DNA binding residues on protein surfaces and analyzing the binding interfaces
Speaker: Juan Liu, Wuhan University, China
11:30~12:10
SNPs on microRNA genes and their effects to target binding
Speaker: Anyuan Guo, Huazhong University of Science and Technology, China
12:20~13:30 Lunch
Section 8 (Chair: Ling-Ling Chen & Andrew Harrison)
13:30~14:10
Tissue Function and Gene Expression Pattern.
Speaker: Zhiliang Ji, Xiamen University, China
14:10~14:50
Population Genomics: Mapping Genetic Diversity and Complex Traits.
Speaker: Shuhua Xu, CAS-MPG Partner Institute for Computational Biology, CAS, China
14:50~15:10
Coffee/Tea break
15:10~15:50
Phosphorylation, phospho-binding and regulatory network
Speaker:Yu Xue, Huazhong University of Science and Technology, China
15:50~16:30
Identification of WD40 repeats by secondary structure aided profile-profile alignment.
Speaker: Chuan Wang, China Agricultural University, China
16:30~17:10
TBA.
Speaker: Guy Baudoux, GlaxoSmithKline Inc., Belgium; Zhejiang University, China
18:00~20:00 Dinner & Discussion

Friday 23^th September 2011

9:30~11:40 Close session & Awards ceremony
Science in the UK and China, and moving between countries; career structures in both countries. We expect to recruit UK students who may be considering spending part of their careers in China and we hope some of the Chinese students similarly look to spend part of their careers in UK.
12:00~ Lunch & Farewell