All references


Human references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
012016_Cell_Manno Midbrain_MannoEctodermMidbrainC1PCW6-111,977
022018_Nature_Zhong PrefrontalCortex_ZhongEctodermPrefrontalCortexSmart-seq2PCW8-PCW262309
032013_Nat Struct Mol Biol_Yan pre-implantation_Yanpre-organogenesis/mRNA-Seqpre-implantation124
042019_Nature_Zhou Implantation_Zhoupre-organogenesis/STRT/Smart-seq2Implantation7,636
052019_PLoS Biol_Hu Retina_HuEctodermRetinaSTRTPCW5-PCW242,421
062016_Cell_Petropoulos pre-implantation_Petropoulospre-organogenesis/Smart-seq2E3-E71,529
072015_Development_Blakeley Blastocyst_Blakeleypre-organogenesis/SMARTBlastocyst28
082021_Nature_Tyser Gastrula_Tyserpre-organogenesis/Smart-seq2CS71,195
092021_Nat Neurosci_Eze Brain_EzeEctodermBrain10xCS12-CS2238,993
102022_Science_Tabula All_Adult 10x/Smart-seq2Adult481,120
112019_PLoS Biol_Hochane Kidney_HochaneMesodermKidney10xPCW9-PCW1817,961
122019_Science_Stewart Kidney_StewartMesodermKidney10xPCW7-PCW1627,203
132021_Cell_Corbett Intestine_CorbettEndodermIntestine10xPCW8-PCW2276,592
142020_Nature_Han All_Fetal-Adult Microwell-seqPCW7-Adult702,968
152021_Cell Stem Cell_Wang Liver_Wang/YolkSac_Wang Endoderm/ExELiver/Yolk sacSTRTPCW817,677
162018_Nat Cell Biol_Gao DigestiveTract_GaoEndodermDigestive tractSTRTPCW6-PCW254,089
172021_Nature_Elmentaite Intestine_ElmentaiteEndodermIntestine10xPCW12-PCW1762,849
182019_Cell Rep_Cui Heart_Cui MesodermHeartSTRTPCW5-PCW253,842
192019_Development_García Airway_GarcíaEndodermAirway10xCultured cells8,766
202018_Nature_Tormo extra-embryonic tissues 10xPCW6-PCW1464,734
212022_Science_Suo extra-embryo/Mesoderm 10xPCW4-PCW17908,178
222020_Science_Park Thymus_ParkMesodermThymus10x/Smart-seq2PCW7-PCW17225,901
232021_Science_Reynolds Skin_ReynoldsEctodermSkin10x/Smart-seq2PCW7-PCW10528,253
242021_Nature_Jardine BoneMarrow_JardineMesodermBoneMarrow10xPCW12-PCW19103,228
252019_Nature_Popescu Liver_PopescuEndodermLiver10xPCW7-PCW17219,301
262021_Cell_Yu Endoderm 10xPCW7-PCW21155,232

Mouse references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
012017_Cell Rep_Mohammed Gastrula_Mohammedpre-organogenesis/G&T-seqE3.5-E6.5509
022019_Nature_Nowotschin Gastrula_Nowotschinpre-organogenesis/10xE3.5-E8.75112,217
032019_Cell Rep_Cheng Gastrula_Chengpre-organogenesis/Smart-seq2E5.25-E6.51,724
042016_Nature_Scialdone early-Mesoderm_Scialdonepre-organogenesis/Smart-seq2E6.5-E7.751,205
052019_Nature_Sala Gastrula_Salapre-organogenesis/10xE6.5-E8.5116,312
062022_Nat Genet_Qiu Organogenesis_Qiupre-organogenesis/sci-RNA-seq3E8.5154,313
072018_Genome Biol_Dong Organogenesis_Dongpre-organogenesis/STRTE9.5-E11.51,916
082019_Nature_Cao Organogenesis_Caopre-organogenesis/sci-RNA-seq3E9.5-E13.5218,034
092016_Cell_Manno Midbrain_MannoEctodermMidbrainC1E11.5-E18.51,907
102021_Nature_Manno Brain_MannoEctodermBrain10xE7-E18292,495
112018_Cell_Zeisel NervousSystem_ZeiselEctodermNervousSystem10xP12-P60160,796
122019_Nature_Soysa Heart_SoysaMesodermHeart10xE7.75-E9.2521,998
132021_Nat Commun_Miao Kidney_MiaoMesodermKidney10xP0/Adult43,636
142017_Development_Adam Kidney_AdamMesodermKidneyDrop-seqP14,853
152018_Nature_Tabula All_Adult 10x/Smart-seq2Adult100,605
162018_Cell_Han All_Fetal-Adult Microwell-seqE14.5/P1/Adult>400,000
172020_Cell Stem Cell_Joost Skin_JoostEctodermSkin10xP5w/P9w5,767
182019_Neuron_Clark Retina_Clark EctodermRetina10xE11-P14120,804
192018_Nature_Montoro Trachea_MontoroEndodermTrachea10xAdult7,193
202020_Nat Commun_Han Organogenesis_Hanpre-organogenesis/10xE8.5-E9.531,268
212017_Elife_Posfai 32-64cell_Posfaipre-organogenesis/Smart-seq232-64 cell100
222020_Cell_Lotto Organogenesis_Lottopre-organogenesis/10xE7.5-E10.544,010
232020_Elife_Marsh Placenta_Marshextra-embryonic tissuesPlacenta10xE9.5-E14.527,326
242020_Science_Park Thymus_ParkMesodermThymus10x/Smart-seq2PCW7-PCW17225,901

References of five groups


Human references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
012016_Cell_Manno Midbrain_MannoEctodermMidbrainC1PCW6-111,675
022018_Nature_Zhong PrefrontalCortex_ZhongEctodermPrefrontalCortexSmart-seq2PCW8-PCW261,751
052019_PLoS Biol_Hu Retina_HuEctodermRetinaSTRTPCW5-PCW241,871
092021_Nat Neurosci_Eze Brain_EzeEctodermBrain10xCS12-CS226,757
102022_Science_Tabula All_Adult 10x/Smart-seq2Adult12,962
142020_Nature_Han All_Fetal-Adult Microwell-seqPCW7-Adult14,257
232021_Science_Reynolds Skin_ReynoldsEctodermSkin10x/Smart-seq2PCW7-PCW105371
Mouse references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
052019_Nature_Sala Gastrula_Salapre-organogenesis/10xE6.5-E8.56,484
062022_Nat Genet_Qiu Organogenesis_Qiupre-organogenesis/sci-RNA-seq3E8.51,400
072018_Genome Biol_Dong Organogenesis_Dongpre-organogenesis/STRTE9.5-E11.5635
082019Nature_Cao Organogenesis_Caopre-organogenesis/sci-RNA-seq3E9.5-E13.520,486
092016_Cell_Manno Midbrain_MannoEctodermMidbrainC1E11.5-E18.51,474
102021_Nature_Manno Brain_MannoEctodermBrain10xE7-E1897,453
112018_Cell_Zeisel NervousSystem_ZeiselEctodermNervousSystem10xP12-P6063,868
152018_Nature_Tabula All_Adult 10x/Smart-seq2Adult5,724
162018_Cell_Han Brain_Han/Skin_HanAll_Fetal-AdultBrain/SkinMicrowell-seqE14.5/P1/Adult9,679
172020_Cell Stem Cell_Joost Skin_JoostEctodermSkin10xP5w/P9w3,760
182019_Neuron_Clark Retina_Clark EctodermRetina10xE11-P1410,897
Human references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
102022_Science_Tabula All_Adult 10x/Smart-seq2Adult13513
132021_Cell_Corbett Intestine_CorbettEndodermIntestine10xPCW8-PCW2215,955
142020_Nature_Han All_Fetal-Adult Microwell-seqPCW7-Adult70,752
152021_Cell Stem Cell_Wang Liver_Wang/YolkSac_Wang Endoderm/ExELiverSTRTPCW84,718
162018_Nat Cell Biol_Gao DigestiveTract_GaoEndodermDigestive tractSTRTPCW6-PCW252,786
172021_Nature_Elmentaite Intestine_ElmentaiteEndodermIntestine10xPCW12-PCW1721,231
192019_Development_García Airway_GarcíaEndodermAirway10xCultured cells4,172
252019_Nature_Popescu Liver_PopescuEndodermLiver10xPCW7-PCW1751,458
262021_Cell_Yu Endoderm 10xPCW7-PCW2130,317
Mouse references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
022019_Nature_Nowotschin Gastrula_Nowotschinpre-organogenesis/10xE3.5-E8.758,800
052019_Nature_Sala Gastrula_Salapre-organogenesis/10xE6.5-E8.51,118
062022_Nat Genet_Qiu Organogenesis_Qiupre-organogenesis/sci-RNA-seq3E8.5400
082019Nature_Cao Organogenesis_Caopre-organogenesis/sci-RNA-seq3E9.5-E13.52,019
152018_Nature_Tabula All_Adult 10x/Smart-seq2Adult5,309
162018_Cell_Han All_Fetal-Adult Microwell-seqE14.5/P1/Adult70,482
202020_Nat Commun_Han Organogenesis_Hanpre-organogenesis/10xE8.5-E9.53,714
222020_Cell_Lotto Organogenesis_Lottopre-organogenesis/10xE7.5-E10.53,112
Human references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
082021_Nature_Tyser Gastrula_Tyserpre-organogenesis/Smart-seq2CS7813
102022_Science_Tabula All_Adult 10x/Smart-seq2Adult33,068
112019_PLoS Biol_Hochane Kidney_HochaneMesodermKidney10xPCW9-PCW1810,194
122019_Science_Stewart Kidney_StewartMesodermKidney10xPCW7-PCW1615,550
142020_Nature_Han All_Fetal-Adult Microwell-seqPCW7-Adult86,637
182019_Cell Rep_Cui Heart_Cui MesodermHeartSTRTPCW5-PCW253,476
212022_Science_Suo Mesoderm 10xPCW4-PCW1737,709
222020_Science_Park Thymus_ParkMesodermThymus10x/Smart-seq2PCW7-PCW1759,981
242021_Nature_Jardine BoneMarrow_JardineMesodermBoneMarrow10xPCW12-PCW1929,226
Mouse references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
022019_Nature_Nowotschin Gastrula_Nowotschinpre-organogenesis/10xE3.5-E8.751,200
042016_Nature_Scialdone early-Mesoderm_Scialdonepre-organogenesis/Smart-seq2E6.5-E7.75661
052019_Nature_Sala Gastrula_Salapre-organogenesis/10xE6.5-E8.515,787
062022_Nat Genet_Qiu Organogenesis_Qiupre-organogenesis/sci-RNA-seq3E8.52,861
072018_Genome Biol_Dong Organogenesis_Dongpre-organogenesis/STRTE9.5-E11.5508
082019Nature_Cao Organogenesis_Caopre-organogenesis/sci-RNA-seq3E9.5-E13.535,474
122019_Nature_Soysa Heart_SoysaMesodermHeart10xE7.75-E9.253,291
132021_Nat Commun_Miao Kidney_MiaoMesodermKidney10xP0/Adult5,012
142017_Development_Adam Kidney_AdamMesodermKidneyDrop-seqP11,800
152018_Nature_Tabula All_Adult 10x/Smart-seq2Adult15,543
162018_Cell_Han All_Fetal-Adult Microwell-seqE14.5/P1/Adult44,605
222020_Cell_Lotto Gastrula_Lottopre-organogenesis/10xE7.5-E10.54,393
242020_Science_Park Thymus_ParkMesoderm/10x/Smart-seq2PCW7-PCW1711,043
Human references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
032013_Nat Struct Mol Biol_Yan pre-implantation_Yanpre-organogenesis/mRNA-Seqpre-implantation124
042019_Nature_Zhou Implantation_Zhoupre-organogenesis/STRT/Smart-seq2Implantation1,508
062016_Cell_Petropoulos pre-implantation_Petropoulospre-organogenesis/Smart-seq2E3-E71,054
072015_Development_Blakeley Blastocyst_Blakeleypre-organogenesis/SMARTBlastocyst27
082021_Nature_Tyser Gastrula_Tyserpre-organogenesis/Smart-seq2CS71,193
Mouse references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
012017_Cell Rep_Mohammed Gastrula_Mohammedpre-organogenesis/G&T-seqE3.5-E6.5506
022019_Nature_Nowotschin Gastrula_Nowotschinpre-organogenesis/10xE3.5-E8.756,931
032019_Cell Rep_Cheng Gastrula_Chengpre-organogenesis/Smart-seq2E5.25-E6.51,713
042016_Nature_Scialdone early-Mesoderm_Scialdonepre-organogenesis/Smart-seq2E6.5-E7.75915
052019_Nature_Sala Gastrula_Salapre-organogenesis/10xE6.5-E8.529,988
062022_Nat Genet_Qiu Organogenesis_Qiupre-organogenesis/sci-RNA-seq3E8.55,661
072018_Genome Biol_Dong Organogenesis_Dongpre-organogenesis/STRTE9.5-E11.51,916
082019Nature_Cao Organogenesis_Caopre-organogenesis/sci-RNA-seq3E9.5-E13.543,799
212017_Elife_Posfai 32-64cell_Posfaipre-organogenesis/Smart-seq232-64 cell100
222020_Cell_Lotto Organogenesis_Lottopre-organogenesis/10xE7.5-E10.54,228
Human references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
142020_Nature_Han All_Fetal-Adult Microwell-seqPCW7-Adult9,960
152021_Cell Stem Cell_Wang YolkSac_Wang extra-embryonic tissuesYolkSacSTRTPCW81,800
202018_Nature_Tormo extra-embryonic tissues 10xPCW6-PCW1417,251
212022_Science_Suo YolkSac_Suoextra-embryonic tissuesYolkSac10xPCW4-PCW179,502
Mouse references
NumberArticlesDatasetsMain groupOrgansPlatformStageCell number
162018_Cell_Han Placenta_HanAll_Fetal-AdultPlacentaMicrowell-seqE14.53,139
232020_Elife_Marsh Placenta_Marshextra-embryonic tissuesPlacenta10xE9.5-E14.53,159