Table of Contents

1 Browse Top

In browse module, users could browse ceRNAs by species and could access ceRNAs of interested species quickly.

2 Search Top

Search can be performed by "Simple Searcher" or "BLAST Searcher".

2.1 Simple Search Top

User could search by transcript or miRNA in Simple Search module.

2.2 Blast Search Top

BLAST Search module is very useful when the name of sequence is unknown or novel sequence of interest.

2.3 Information of ceRNA pairs Top

From each browse or search result page, user could obtain various information of ceRNA pairs, such as overview of ceRNA (various scores), expression levels of RNA, information of each ceRNA pair, miRNA target site information and GO annotations.

3 Network Top

3.1 Use the viewer of "display network" Top

3.2 Use the viewer of "add to mynetwork" Top

4 Gene set analysis Top

5 Predict Top


If you have any question/suggestion about PceRBase, please feel free to contact us:

Data Sources:
Species ID Species Common Name Release Version Source
aly Arabidopsis lyrata Lyrate rockcress v1.0 Link
ath Arabidopsis thaliana Arabidopsis TAIR10 Link
bdi Brachypodium distachyon Purple false brome v2.1 Link
bna Brassica napus Rapeseed AST_PRJEB5043_v1 Link
bra Brassica rapa oilseed v1.3 Link
ccl Citrus clementina Clementine v1.0 Link
cpa Carica papaya Papaya ASGPBv0.4 Link
cre Chlamydomonas reinhardtii - v5.5 Link
csi Citrus sinensis Orange v1.1 Link
gma Glycine max Soybean Wm82.a2.v1 Link
gra Gossypium raimondii Cotton v2.1 Link
han Helianthus annuus Sunflower HanXRQr1.0 Link
lus Linum usitatissimum flax v1.0 Link
mdo Malus x domestica Apple v1.0 Link
mes Manihot esculenta Cassava v4.1  Link
mtr Medicago truncatula Medicago Mt4.0v1 Link
osj Oryza sativa japonica Rice v7.0 Link
ppa Physcomitrella patens Moss v3.0 Link
ppe Prunus persica Peach v1.0 Link
ptr Populus trichocarpa Poplar v3.0 Link
rco Ricinus communis Castor bean v0.1 Link
sbi Sorghum bicolor Sorghum v2.1 Link
sly Solanum lycopersicum Tomato iTAG2.3 Link
smo Selaginella moellendorffii Spikemosses v1.0 Link
stu Solanum tuberosum Potato v3.4 Link
tca Theobroma cacao Cocoa v1.1 Link
vvi Vitis vinifera Grape Genoscope.12X Link
zma Zea mays Maize 6a Link
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