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    PlantNATsDB predicted 2,146,803 NATs from 70 plant species. PlantNATsDB collected 196 small RNA datasets from GEO database.
Statistics of NATs
No. ID Scientific name Genesa Cis-NATs Trans-NATs All-NATs
1 ace Allium cepa 4063 (10) NA 5 5
2 aco Aquilegia coerulea 13556 (655) NA 141 141
3 aly Arabidopsis lyrata 32670 (4841) 918 5839 6757
4 ath Arabidopsis thaliana 33239 (8049) 3005 4783 7788
5 bvu Beta vulgaris 4785 (249) NA 192 192
6 bdi Brachypodium distachyon 25532 (5363) 36 107897 107933
7 bna Brassica napus 50542 (20771) NA 45930 45930
8 can Capsicum annuum 14727 (2138) NA 6119 6119
9 cpa Carica papaya 25536 (3991) 180 7122 7302
10 cre Chlamydomonas reinhardtii 15935 (6549) 1450 25429 26879
11 ccl Citrus clementina 32287 (2243) NA 3554 3554
12 csi Citrus sinensis 26081 (3451) NA 7492 7492
13 cca Coffea canephora 7511 (202) NA 163 163
14 csa Cucumis sativus 32775 (6104) 1471 21902 23373
15 esi Ectocarpus siliculosus 9122 (387) NA 340 340
16 ees Euphorbia esula 10727 (103) NA 96 96
17 far Festuca arundinacea 10617 (309) NA 151 151
18 fpr Festuca pratensis 12248 (156) NA 96 96
19 fve Fragaria vesca 34809 (10622) 574 117212 117786
20 gma Glycine max 46367 (11352) 436 77903 78339
21 ghi Gossypium hirsutum 50081 (31296) NA 80835 80835
22 gra Gossypium raimondii 9508 (667) NA 426 426
23 han Helianthus annuus 20130 (2460) NA 2255 2255
24 hvu Hordeum vulgare 43306 (6993) NA 8503 8503
25 ini Ipomoea nil 11754 (57) NA 31 31
26 lsa Lactuca sativa 12505 (347) NA 263 263
27 lse Lactuca serriola 8047 (215) NA 140 140
28 lja Lotus japonicus 40504 (7783) 126 29449 29575
29 mac Musa acuminata 37604 (2619) 1013 7292 8305
30 mdo Malus x domestica 34945 (3631) NA 4356 4356
31 mes Manihot esculenta 47443 (14342) 4454 25854 30308
32 mtr Medicago truncatula 50962 (18083) 1151 163535 164686
33 mcr Mesembryanthemum crystallinum 3627 (207) NA 156 156
34 mpu Micromonas pusilla CCMP1545 10547 (4717) 1573 10308 11881
35 msp Micromonas sp. RCC299 10108 (4321) 2189 149 2338
36 mgu Mimulus guttatus 27501 (8885) 1032 159077 160109
37 nbe Nicotiana benthamiana 7712 (429) NA 564 564
38 nta Nicotiana tabacum 45554 (3962) NA 3521 3521
39 osi Oryza sativa subsp. indica 40745 (10153) 387 143701 144088
40 osj Oryza sativa subsp. japonica 57624 (30799) 1186 408603 409789
41 olu Ostreococcus lucimarinus CCE9901 7805 (2773) 1482 16 1498
42 ota Ostreococcus tauri 7725 (3030) 1620 170 1790
43 pvi Panicum virgatum 52936 (4631) NA 4802 4802
44 phy Petunia hybrida 2259 (39) NA 25 25
45 pco Phaseolus coccineus 22518 (1063) NA 754 754
46 pvu Phaseolus vulgaris 11954 (638) NA 433 433
47 ppa Physcomitrella patens 35938 (3976) 195 24201 24396
48 pab Picea abies 42746 (22360) NA 43535 43535
49 pta Pinus taeda 39798 (10897) NA 14298 14298
50 ptr Populus trichocarpa 41377 (5001) 744 12363 13107
51 ppe Prunus persica 27852 (4642) 298 25865 26163
52 qro Quercus robur 17804 (2138) NA 2142 2142
53 rsa Raphanus sativus 17939 (356) NA 233 233
54 rco Ricinus communis 31221 (2570) 495 2853 3348
55 sof Saccharum officinarum 42377 (5311) NA 7210 7210
56 sce Secale cereale 1471 (52) NA 32 32
57 smo Selaginella moellendorffii 22285 (2399) 669 889 1558
58 sly Solanum lycopersicum 28167 (2039) NA 1793 1793
59 sme Solanum melongena 14512 (219) NA 336 336
60 stu Solanum tuberosum 31972 (2849) NA 2866 2866
61 sbi Sorghum bicolor 34496 (8231) 241 145133 145374
62 she Striga hermonthica 9275 (178) NA 128 128
63 tca Theobroma cacao 14724 (889) NA 1593 1593
64 ter Triphysaria eriantha 17442 (1491) NA 1224 1224
65 tve Triphysaria versicolor 7165 (672) NA 539 539
66 tae Triticum aestivum 93508 (32258) NA 120316 120316
67 vun Vigna unguiculata 19333 (592) NA 405 405
68 vvi Vitis vinifera 26346 (11898) 685 107707 108392
69 vca Volvox carteri 15669 (7438) 273 89949 90222
70 zma Zea mays 32540 (6944) 1528 24198 25726

aThe total number of genes forming the NATs were shown in parenthesis.

   NA: Not Applicable or Not Available.

Small RNA Datasets
No. ID Scientific name GEO Datasets
Series Samples
1 ath Arabidopsis thaliana 15   Detail 80   Detail
2 aly Arabidopsis lyrata 3   Detail 8   Detail
3 bdi Brachypodium distachyon 2   Detail 4   Detail
4 cre Chlamydomonas reinhardtii 3   Detail 6   Detail
5 csi Citrus sinensis 1   Detail 2   Detail
6 ghi Gossypium hirsutum 2   Detail 6   Detail
7 gma Glycine max 2   Detail 5   Detail
8 mtr Medicago truncatula 2   Detail 5   Detail
9 nbe Nicotiana benthamiana 2   Detail 6   Detail
10 osi Oryza sativa subsp. indica 1   Detail 2   Detail
11 osj Oryza sativa subsp. japonica 7   Detail 38   Detail
12 ppa Physcomitrella patens 3   Detail 10   Detail
13 ppe Prunus persica 1   Detail 2   Detail
14 sly Solanum lycopersicum 1   Detail 2   Detail
15 smo Selaginella moellendorffii 1   Detail 1   Detail
16 tae Triticum aestivum 2   Detail 2   Detail
17 vvi Vitis vinifera 2   Detail 5   Detail
18 zma Zea mays 4   Detail 12   Detail
Total 18 54 196

NOTE: All small RNA datasets were retrieved from NCBI GEO database.

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Author: Dijun Chen    © 2010-2012 Ming Chen's Lab, Zhejiang University