AthRiboNC - lncRNA: AT1G03987

Gene Summary:

ncRNA Name: AT1G03987

Parent Gene: AT1G03987

Chromosome: 1

Start: 11101

End: 11372

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
AAACAATGTGAAAACATATCATACCTTTTGTTCTTTTTAATATAATAATTGAATTACTAAATGGATGGATCAGTCCTTCTTCCATAGCTAGCTTCTCTTTATTTTCTCTGCCCATAACCTGCAGAAAATCTCTTTAACCGAGCAAAATTACAAGAGTAACCAAACAAACAAAATAGGACCATCAGAGAGAGAGAAAAGAGTGCCTTTTTTTGGACCTGCCCATTAGCTTAGAATGTACCATGAAACACTTTGTCAGTGTAGGGAGATAGGCA

Transcript Information:

Transcript Name: AT1G03987.1

Sequence:
AAACAATGTGAAAACATATCATACCTTTTGTTCTTTTTAATATAATAATTGAATTACTAAATGGATGGATCAGTCCTTCTTCCATAGCTAGCTTCTCTTTATTTTCTCTGCCCATAACCTGCAGAAAATCTCTTTAACCGAGCAAAATTACAAGAGTAACCAAACAAACAAAATAGGACCATCAGAGAGAGAGAAAAGAGTGCCTTTTTTTGGACCTGCCCATTAGCTTAGAATGTACCATGAAACACTTTGTCAGTGTAGGGAGATAGGCA

sORF Information:

Expression:

Ignore zero expression

Mean TPM: 0.08355098945278987

Standard Deviation:0.48307542137295884

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT1G06287	0.783860130497593	0.142530760957214	0.291514314470924
AT1G34812	0.768349344381735	0.121470215023308	0.310112087973176
AT1G08883	0.768349344381735	0.121470215023308	0.310112087973176
AT2G09185	0.768349344381735	0.121470215023308	0.310112087973176
AT5G06185	0.765985603314602	0.118512690374493	0.305679233087828
AT1G09777	0.749872873695896	0.0999772410435444	0.269945126039014
AT5G29054	0.748427264417987	0.0984457110337955	0.264644786026173
AT2G09885	0.746287113697526	0.0962160538484566	0.259519162508809
AT3G61826	0.733513136978881	0.0838036955736204	0.0406561498990849
AT4G03135	0.693526376236946	0.0535184913787524	0.0332333426124888
AT5G15745	0.693029652562067	0.0532126070469237	0.156339606934167
AT5G59616	0.670698193673199	0.0409465290642379	0.0267562040238069
AT2G21360	0.664785759831842	0.0381464092643107	0.0400598847664226
AT4G04785	0.631442787459659	0.0252738879480592	0.0241134444540981
AT4G36245	0.627492788554086	0.0240364271095711	0.064949932024616
AT5G08840	0.613746435890027	0.0201331562968137	0.0245536210993095
AT1G23645	0.611628696862752	0.0195840644736825	0.0127308953791026
AT1G08363	0.603708329056839	0.0176448244174257	0.0172194708151613
AT5G02205	0.590747345968689	0.014832495776483	0.0109779643880027
AT5G17750	0.58345396303027	0.0134292807310756	0.0215535246459917