AthRiboNC - lncRNA: AT1G03997

Gene Summary:

ncRNA Name: AT1G03997

Parent Gene: AT1G03997

Chromosome: 1

Start: 32727

End: 33009

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
ACCCTAATTGGCAGAGAGAGAATCAATCGAATCAAGAGTATTAAATGGAAAAAGCGAATCAAGACCCCACAAGGGAAAACAATCCTTAAAGCAGACTTGAGATCGATCATACCCAAATTATGGATTCATATATTGTTAACGTATCGATTACTGAAAAGATGTATACCAAATCTGTTCACTTTTTCTCTATAGACTCGATGGATGATTGAGATTTGAAGCAACAAAATACCCAGAAGATTAAACATGGAAAAGCATCAAACTTTGATGATCTTAGAACGATGAC

Transcript Information:

Transcript Name: AT1G03997.1

Sequence:
ACCCTAATTGGCAGAGAGAGAATCAATCGAATCAAGAGTATTAAATGGAAAAAGCGAATCAAGACCCCACAAGGGAAAACAATCCTTAAAGCAGACTTGAGATCGATCATACCCAAATTATGGATTCATATATTGTTAACGTATCGATTACTGAAAAGATGTATACCAAATCTGTTCACTTTTTCTCTATAGACTCGATGGATGATTGAGATTTGAAGCAACAAAATACCCAGAAGATTAAACATGGAAAAGCATCAAACTTTGATGATCTTAGAACGATGAC

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length
AT1G03997.1	244	282	ATG	12
AT1G03997.1	45	89	ATG	14
AT1G03997.1	120	209	ATG	29

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.021209748459348962

Standard Deviation:0.16043129882240514

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT2G06575	0.736551032783173	0.0866209101158952	0.0968119418036831
AT1G04053	0.708150921143804	0.0632421455330839	0.0727945626318662
AT4G07345	0.685446378676449	0.0487290439340316	0.133269081475713
ath_circ_024451	0.685446378676449	0.0487290439340316	0.133269081475713
ath_circ_025351	0.685446378676449	0.0487290439340316	0.133269081475713
ath_circ_048512	0.66749816535588	0.0394094715090992	0.116182374369193
AT1G73065	0.655375625649234	0.0340347278745178	0.103414676628542
AT3G52605	0.639855465520676	0.0280966842997249	0.0898508424584599
ath_circ_017127	0.625850706957599	0.0235378058976017	0.0782329972759812
AT3G09305	0.583690553692113	0.0134729072117176	0.010985886253829
AT1G09253	0.57234406993716	0.0115148291775637	0.0101848376416022
ath_circ_012190	0.547258703051702	0.00804528466019007	0.0270781588248954
AT5G01065	0.546786094427655	0.00798986958028421	0.0718436993024801
AT1G05687	0.535649133798697	0.00677709003849133	0.0626191809178544
AT3G56540	0.518529145060907	0.00522619217118018	0.0243853222590106
ath_circ_051483	0.510590979154421	0.00461939501393612	0.00280757535494779
AT1G17065	0.502692601141728	0.00407774388431864	0.014219073541362
AT1G09103	0.485228736132277	0.00307306751203627	0.00379591942717385
AT1G31173	0.482038476023049	0.00291510121181578	0.0043383757450236
AT3G22723	0.478874700855767	0.00276550946739404	0.00321821218606392