AthRiboNC - lncRNA: AT1G04003

Gene Summary:

ncRNA Name: AT1G04003

Parent Gene: AT1G04003

Chromosome: 1

Start: 43087

End: 43295

Strand: -

Gemone reference: TAIR10

Genomic Sequence:
GTATACACATTTCTTTGCGATATTAGTGGCCACAAAATTCCCAATTATGCTCGAAGATAGAAGTTATAAATTAGAAAACTTAGTGAGGTACATGTCGACCCACACTATATATTCTTAACTTTTTTAAAAACGTTATTCTTGTCTCGTTACTTTCAATTGCTTTTCTGCTCCCTCCAACTATTTTTAGTGGGTTTGTTCGATATTATGTT

Transcript Information:

Transcript Name: AT1G04003.1

Sequence:
GTATACACATTTCTTTGCGATATTAGTGGCCACAAAATTCCCAATTATGCTCGAAGATAGAAGTTATAAATTAGAAAACTTAGTGAGGTACATGTCGACCCACACTATATATTCTTAACTTTTTTAAAAACGTTATTCTTGTCTCGTTACTTTCAATTGCTTTTCTGCTCCCTCCAACTATTTTTAGTGGGTTTGTTCGATATTATGTT

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
AT1G04003.1	47	118	ATG	23

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.013530875264639029

Standard Deviation:0.19886244102967154

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT1G06523	1.0	1.0	0.5219001953787
AT1G09717	1.0	1.0	0.5219001953787
AT2G17972	1.0	1.0	0.5219001953787
AT2G09105	1.0	1.0	0.5219001953787
AT2G09610	1.0	1.0	0.5219001953787
AT3G02825	1.0	1.0	0.5219001953787
AT4G07190	1.0	1.0	0.5219001953787
AT5G04685	1.0	1.0	0.5219001953787
ath_circ_047918	1.0	1.0	0.5219001953787
AT1G04003	1.0	1.0	1.0
AT5G05735	0.999808679129593	0.998470457547579	0.522186817985802
AT5G23908	0.997907173203758	0.983379511523	0.52203853676721
AT5G09435	0.996459012005027	0.972020701356699	0.522773311206904
AT3G05265	0.995453212093783	0.964199314572847	0.520454708535099
AT4G05790	0.993699683011727	0.950695000923102	0.523178933495527
AT1G18420	0.993607614104256	0.949990554117657	0.523423080636812
AT1G52185	0.992955385094514	0.945013219344883	0.509288345096202
AT5G03215	0.99276841424389	0.94359060941804	0.522385105686143
AT1G07717	0.991720018464314	0.93564831225122	0.521951595542644
AT4G06285	0.990854055337707	0.929132239038048	0.510021731790928