AthRiboNC - lncRNA: AT1G04007

Gene Summary:

ncRNA Name: AT1G04007

Parent Gene: AT1G04007

Chromosome: 1

Start: 72646

End: 73108

Strand: -

Gemone reference: TAIR10

Genomic Sequence:
GCTTCTTGTTCTCATCAAGGTACTGCGTTTAAGCAAAGGAAAGAGAATGACAAGGAAATGACGATGCAGCCTATCATCTTACCATGGAAGACATCAAGCCAAGAGAAAGTACAAAACAACAACATCAAGCAAGCATCTAACTTCAATGTCCATTCTTGAAAACCGGATTCAAAGTTTCCTGACCCACCAAGCATCTACTAATTTCCTAGTCCTAGAAACTGTCTCTTCTCATCATCACCAACAACAGACTCTCAAGTGTTGTGGAATTAACGAGAAAGATTCAAATGAAAACCCTAATTGCCACCAATTACAGTCAAAAGAGTATTACTTGCACTCAGAAGCCAATGATTTTGTCAGTACAAAAAAGCTCTAAGAGCCTCCTAAGTAGTGTTGAACAAATTAAGAGAGAGGGAGAGATATAGGGTGAGAAAGAAGGAACCTTTTGGATCTGTTCGGTAGTGAT

Transcript Information:

Transcript Name: AT1G04007.1

Sequence:
GCTTCTTGTTCTCATCAAGGTACTGCGTTTAAGCAAAGGAAAGAGAATGACAAGGAAATGACGATGCAGCCTATCATCTTACCATGGAAGACATCAAGCCAAGAGAAAGTACAAAACAACAACATCAAGCAAGCATCTAACTTCAATGTCCATTCTTGAAAACCGGATTCAAAGTTTCCTGACCCACCAAGCATCTACTAATTTCCTAGTCCTAGAAACTGTCTCTTCTCATCATCACCAACAACAGACTCTCAAGTGTTGTGGAATTAACGAGAAAGATTCAAATGAAAACCCTAATTGCCACCAATTACAGTCAAAAGAGTATTACTTGCACTCAGAAGCCAATGATTTTGTCAGTACAAAAAAGCTCTAAGAGCCTCCTAAGTAGTGTTGAACAAATTAAGAGAGAGGGAGAGATATAGGGTGAGAAAGAAGGAACCTTTTGGATCTGTTCGGTAGTGAT

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length
AT1G04007.1	58	159	ATG	33
AT1G04007.1	146	373	ATG	75
AT1G04007.1	84	140	ATG	18

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.14059688313058533

Standard Deviation:0.5095529749819034

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT2G08055	0.645242482642936	0.0300457900488825	0.0286055387258351
AT5G39330	0.61965141334996	0.0217359965687922	0.0164597696826269
ath_circ_050735	0.59396219882785	0.0154906788595056	0.0162149447613794
ATMG01060	0.579104262897392	0.0126489389062686	0.0201319270392478
AT3G44265	0.556721157231648	0.00922787727182833	0.00838297005529266
AT4G25434	0.551440210025172	0.00855041998399874	0.00753080432928217
AT1G59620	0.551265413853312	0.00852876144599896	0.011952109698602
AT1G66590	0.550909135587604	0.0084847645220801	0.0162488873454176
AT2G08045	0.544246364228456	0.00769775867405157	0.00767047780757504
AT3G08635	0.538918513079915	0.00711516249467426	0.00807871025123382
AT5G02225	0.529124372126896	0.00614415451740176	0.00933192988740455
AT2G10553	0.528643517294195	0.00609962712283103	0.00551404317185808
AT2G07634	0.524428514165346	0.00572124276913511	0.0103313368347001
AT2G25440	0.515531498179159	0.00498932324025897	0.0135954859538147
AT4G08925	0.510374183599774	0.00460372725102607	0.0217787888242438
AT5G15360	0.506952915421195	0.00436255584860882	0.0184322391427824
AT4G11590	0.506759207939194	0.00434923815537159	0.0273060850169036
AT4G04135	0.495038639747076	0.00360672300076189	0.015378995129648
AT5G24080	0.487538229968871	0.00319204797623114	0.00319743644672075
AT2G15130	0.482099724567586	0.00291806570759747	0.00315948699304331