AthRiboNC - lncRNA: AT1G04013

Gene Summary:

ncRNA Name: AT1G04013

Parent Gene: AT1G04013

Chromosome: 1

Start: 74435

End: 74683

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
TGATGCCATTTTCTTCTAAAGCTGAAAGTGAACCATTATTACAACTTAACACTCAACTCACAAGAGGAGAAGCAACAAAGCTTATGTAAGGATTTAGTATTAAGGCCAAAAAAACACAGATCAAATTCAATTATTGAAGCTTTACTTATCAAGTTATCATATAACCAATGAAGACGGTAATTCAAAAGAAAAATAAAAGGGTTTGTAGAATAATTGATACGTTTACCTTTGCCGATTCAGAGACAGTGA

Transcript Information:

Transcript Name: AT1G04013.1

Sequence:
TGATGCCATTTTCTTCTAAAGCTGAAAGTGAACCATTATTACAACTTAACACTCAACTCACAAGAGGAGAAGCAACAAAGCTTATGTAAGGATTTAGTATTAAGGCCAAAAAAACACAGATCAAATTCAATTATTGAAGCTTTACTTATCAAGTTATCATATAACCAATGAAGACGGTAATTCAAAAGAAAAATAAAAGGGTTTGTAGAATAATTGATACGTTTACCTTTGCCGATTCAGAGACAGTGA

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
AT1G04013.1	3	89	ATG	28

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.4359485875559349

Standard Deviation:1.4150203576204536

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
ath_circ_011520	0.547203784020107	0.00803882798320622	0.022048586356044
ath_circ_048571	0.547203784020107	0.00803882798320622	0.022048586356044
ath_circ_050532	0.547203784020107	0.00803882798320622	0.022048586356044
AT5G63180	0.530517411492888	0.00627476023377332	0.0240406894130562
ath_circ_024972	0.5207908535492	0.00541136447510027	0.0179166388203111
AT5G21920	0.512666918859152	0.00477180134315827	0.0239852268858296
AT1G01190	0.502205773997069	0.00404625838938313	0.0107408107396911
AT2G08135	0.501026782145766	0.00397088703157584	0.0141768422679514
ath_circ_014030	0.49633789033513	0.00368315031410192	0.0124217451784428
AT3G48610	0.482538951576552	0.00293940216824447	0.0311495321369823
AT2G01290	0.480685786256655	0.00285029783427384	0.014140694496015
AT5G23980	0.478537946878147	0.00274998962702013	0.015384801085489
AT1G71980	0.478469765174279	0.00274685665911595	0.0148489426485762
ath_circ_023232	0.478061600202866	0.00272816659419547	0.00451498865165606
AT2G18150	0.476078117759337	0.00263891718750812	0.0158122347585107
AT5G55710	0.473066812397548	0.00250830216171881	0.0257301192548724
AT5G35100	0.471753774796401	0.00245314416480741	0.0260072272826461
AT5G43260	0.471746444145188	0.00245283922325206	0.0147692519680718
AT5G61495	0.469568818373532	0.00236370895013168	0.00756858916077934
ath_circ_010163	0.469551457000346	0.00236300989309846	0.00744792656256747