AthRiboNC - lncRNA: AT1G04033

Gene Summary:

ncRNA Name: AT1G04033

Parent Gene: AT1G04033

Chromosome: 1

Start: 255022

End: 255384

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
ATGACGATGACAAGGGAAGGCTCGCCGACAAAAACACTCTCTGATTTCAAAAGGTATTTTTTTCTTCGAATTCAATTTTGAATTGATGTCTTAAATTGCTTCCTGTAAGGTGGTGTCTCTTCTCCTTATGTAGTAGATTTGCCATCATCTCTTCTCCGGCTTTTCGCCGTTGTTGTTGATACTCTCTGTTTTGTGTCGTAAACATCAGAGAGACGATCACATTCCGCTCTCACCGCTACATGTCGTCGAAACTCAACAAAGCCCAATAAGAATAAGGAATTCCAGCCCATGACCATAATTGTCTCACATTCAGCAGACACTACAATTATACAAGCTATTGGCCAGGTCTATTTCTATCCTATA

Transcript Information:

Transcript Name: AT1G04033.1

Sequence:
ATGACGATGACAAGGGAAGGCTCGCCGACAAAAACACTCTCTGATTTCAAAAGGTATTTTTTTCTTCGAATTCAATTTTGAATTGATGTCTTAAATTGCTTCCTGTAAGGTGGTGTCTCTTCTCCTTATGTAGTAGATTTGCCATCATCTCTTCTCCGGCTTTTCGCCGTTGTTGTTGATACTCTCTGTTTTGTGTCGTAAACATCAGAGAGACGATCACATTCCGCTCTCACCGCTACATGTCGTCGAAACTCAACAAAGCCCAATAAGAATAAGGAATTCCAGCCCATGACCATAATTGTCTCACATTCAGCAGACACTACAATTATACAAGCTATTGGCCAGGTCTATTTCTATCCTATA

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
AT1G04033.1	1	81	ATG	26

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.07960778886785744

Standard Deviation:0.7207750671687772

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT5G06785	0.99081238241267	0.928819668613982	0.321542782172348
AT1G08023	0.95579345052685	0.696486017272363	0.289607183233787
AT5G09105	0.953693253215951	0.684336465294979	0.264861046982143
AT3G43583	0.948367483628097	0.654354721427261	0.337432075123709
AT2G08980	0.942201175066736	0.621082270890264	0.429610127720668
AT4G05675	0.94154857978856	0.617649168383122	0.421508782914575
AT4G05875	0.94154857978856	0.617649168383122	0.421508782914575
AT1G75891	0.940049218124558	0.609824320146407	0.424044978505132
AT1G08147	0.939772467165542	0.608389538527027	0.426307113049602
AT1G09223	0.939673436239268	0.607876842826233	0.415250275225712
AT1G07725	0.935288241615958	0.585549744292748	0.41660036726795
AT3G61962	0.935288241615958	0.585549744292748	0.41660036726795
AT3G61117	0.935288241615958	0.585549744292748	0.41660036726795
AT3G05915	0.935288241615958	0.585549744292748	0.41660036726795
AT3G01365	0.935288241615958	0.585549744292748	0.41660036726795
AT1G09173	0.935288241615958	0.585549744292748	0.41660036726795
AT1G08953	0.935288241615958	0.585549744292748	0.41660036726795
AT1G06633	0.935288241615958	0.585549744292748	0.41660036726795
AT1G05607	0.935288241615958	0.585549744292748	0.41660036726795
AT1G05283	0.935288241615958	0.585549744292748	0.41660036726795