AthRiboNC - lncRNA: AT1G04047

Gene Summary:

ncRNA Name: AT1G04047

Parent Gene: AT1G04047

Chromosome: 1

Start: 270067

End: 270517

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
CGCTGAAAGTATCCTCTGTCTGATCTGCATATGCAAAATGTCATAGATAATATAGAGTTAATTGGCTACAAAACCCCATCGAACCATAAGAAATTGATTTGGTGTTCAAGAGTAAATGAGTAATCAGTACTCTCAACATAGAGAGAGTAACAACAGACTAAAAACTCAGCAAAACAAAGTAGTCACTACTCATTCGTTGAAGATCCAGGCAAACGCAACAAAGCTGAGCATAGAAGTCAGGAACATTCATATCTCATTCAAAGTTTTCTAAGATCAAAATTCAACCCTAGCAACTAACAACTAATAAAGAGATCTAACCAATATCAATTGAAACCAAGTGATTGTAGGCTGTAGCAAATATCTGCGATTCGAAGCGATGATGATCGAGAAGGTTGACGGTTCGATTTATTAAACACAAACAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAG

Transcript Information:

Transcript Name: AT1G04047.1

Sequence:
CGCTGAAAGTATCCTCTGTCTGATCTGCATATGCAAAATGTCATAGATAATATAGAGTTAATTGGCTACAAAACCCCATCGAACCATAAGAAATTGATTTGGTGTTCAAGAGTAAATGAGTAATCAGTACTCTCAACATAGAGAGAGTAACAACAGACTAAAAACTCAGCAAAACAAAGTAGTCACTACTCATTCGTTGAAGATCCAGGCAAACGCAACAAAGCTGAGCATAGAAGTCAGGAACATTCATATCTCATTCAAAGTTTTCTAAGATCAAAATTCAACCCTAGCAACTAACAACTAATAAAGAGATCTAACCAATATCAATTGAAACCAAGTGATTGTAGGCTGTAGCAAATATCTGCGATTCGAAGCGATGATGATCGAGAAGGTTGACGGTTCGATTTATTAAACACAAACAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAG

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
AT1G04047.1	116	271	ATG	51

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.43422589178923054

Standard Deviation:1.2846480391557722

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
ATCG00020	0.617011380909976	0.0210060985242437	0.0163949224862298
ATMG01090	0.590594692907727	0.0148018609660304	0.0106127605954919
AT1G06137	0.571376279176167	0.0113599822462954	0.018297929042027
AT1G05017	0.55705096035083	0.0092717010112849	0.0173136758828863
AT2G45920	0.554310818202989	0.00891306013485053	0.00569125763415075
AT5G03115	0.553018520329029	0.00874817388744502	0.00734369774596205
AT3G55970	0.552020306733811	0.00862264353641518	0.0132902702806988
AT2G39518	0.548550880219902	0.00819851754117389	0.0182783886199822
AT1G34317	0.544766812179601	0.00775684540412562	0.0115511006358772
ATMG01200	0.542383569666255	0.00748948922659753	0.0051501803351403
AT3G52350	0.542122483941001	0.00746069620884723	0.00511891152755769
AT1G56130	0.533244199400344	0.00653746112474266	0.015363270983922
ath_circ_024950	0.532985100253738	0.00651209229301124	0.0142273334219557
ATCG00530	0.532137280358704	0.0064296818746196	0.00639530791843965
AT5G14180	0.530733771365073	0.0062952616645478	0.0133237061963355
AT4G04480	0.530027172225119	0.00622852306063545	0.0212973524437807
ATCG00720	0.528424167849096	0.00607940921259569	0.00910458410451335
AT1G20880	0.525880893116323	0.0058492358709313	0.00838464955202875
AT5G36970	0.524816072143739	0.00575515483707653	0.0186577703047694
AT1G53780	0.52033498528348	0.00537358616423073	0.00568211523532675