AthRiboNC - lncRNA: AT1G04053

Gene Summary:

ncRNA Name: AT1G04053

Parent Gene: AT1G04053

Chromosome: 1

Start: 275473

End: 276319

Strand: -

Gemone reference: TAIR10

Genomic Sequence:
AGCTTTGTTCAGGGAAGCAAAGTAATTATCTATTGGGATGATTATTGCGTACCGAAAAGGAAAAAAGAAAGAGGTGAGATCTTGAATCACAGAAGATACAAATAGTAAAGAAGTTAAATGAAAAATACCCAAGAAAACGAAAGCAGAAAATATGAATTTTGACTGAAACGAATTAAGATGCGGTAAGTTCCATTCAGAGATTGACTCGTCCCTTGATGATGTCGAGGCTCATCTCGCTAGGATCTGTTGCTTGCAATTCAACTTGAATCCCATCCAATTCCCTCTTGAACCTGTCCTTTGAGCTTGCATACAACATCTTACTCCTCACTCTTGATGTATCAGGTGACCTGAAGCAAGTTGATGTCTCAATTATAACATCTAATTTTTCAAATCATTAAAAATACAAGGGCAGGGAGTTGTACCATGCGATGAAAAAGATTTTGCTCTTCTGGCAGTTCTCAGGGGTGGTGAAATCATAGTCATAGACAGCATATCGGCACTCATCCTCGGGAATAGATCTGGTGAAATCTTCGTAAGTTTCTTCTGGATTCCCAAGCTTGTCTATCATAACTTGCTGAGCCTTCTCATCAATTTTGAACACAATGAACCTATAGTTCCTCTTTGCTTTTAACTCCAAGAACTTGAGCTTGCACTCATCGCTAACGTGCATCCCAGACGCTGAATTAGCCTGCACAGTCAAACACATGCATAGTCAGTTAACTTATATGATCACAATACATTACATGAATGGCAATACCAGATTGATAAAAATGAAATGTAGGAAGAGACCATTGTTCTCTGCTTGAAATTGGGGCTTGATGATCTGAAAGTAGAGAAGGTAGGGGGG

Transcript Information:

Transcript Name: AT1G04053.1

Sequence:
AGCTTTGTTCAGGGAAGCAAAGTAATTATCTATTGGGATGATTATTGCGTACCGAAAAGGAAAAAAGAAAGAGGTGACCTGAAGCAAGTTGATGTCTCAATTATAACATCTAATTTTTCAAATCATTAAAAATACAAGGGCAGGGAGTTGTACCATGCGATGAAAAAGATTTTGCTCTTCTGGCAGTTCTCAGGGGTGGTGAAATCATAGTCATAGACAGCATATCGGCACTCATCCTCGGGAATAGATCTGGTGAAATCTTCGTAAGTTTCTTCTGGATTCCCAAGCTTGTCTATCATAACTTGCTGAGCCTTCTCATCAATTTTGAACACAATGAACCTATAGTTCCTCTTTGCTTTTAACTCCAAGAACTTGAGCTTGCACTCATCGCTAACGTGCATCCCAGACGCTGAATTAGCCTGCACAGTCAAACACATGCATAGTCAGTTAACTTATATGATCACAATACATTACATGAATGGCAATACCAGATTGATAAAAATGAAATGTAGGAAGAGACCATTGTTCTCTGCTTGAAATTGGGGCTTGATGATCTGAAAGTAGAGAAGGTAGGGGGG

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
AT1G04053.1	38	82	ATG	14

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.024982828693892813

Standard Deviation:0.2180480985858666

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT2G06575	0.899135353105405	0.427169849976127	0.19918983628267
AT5G01065	0.783249741014123	0.141645270989285	0.311928226300305
ath_circ_048281	0.776153002678257	0.131697865365621	0.626430779339474
AT3G06085	0.776153002678257	0.131697865365621	0.626430779339474
AT3G01045	0.776153002678257	0.131697865365621	0.626430779339474
AT2G09995	0.776153002678257	0.131697865365621	0.626430779339474
AT2G46308	0.776153002678257	0.131697865365621	0.626430779339474
AT2G37910	0.776153002678257	0.131697865365621	0.626430779339474
AT2G06725	0.776153002678257	0.131697865365621	0.626430779339474
AT2G06115	0.776153002678257	0.131697865365621	0.626430779339474
AT2G11271	0.776153002678257	0.131697865365621	0.626430779339474
AT2G04655	0.776153002678257	0.131697865365621	0.626430779339474
AT1G08647	0.776153002678257	0.131697865365621	0.626430779339474
AT1G63005	0.776153002678257	0.131697865365621	0.626430779339474
AT1G07537	0.776153002678257	0.131697865365621	0.626430779339474
AT1G07417	0.776153002678257	0.131697865365621	0.626430779339474
AT1G07273	0.776153002678257	0.131697865365621	0.626430779339474
AT1G06933	0.776153002678257	0.131697865365621	0.626430779339474
AT1G27710	0.776153002678257	0.131697865365621	0.626430779339474
AT1G03325	0.776153002678257	0.131697865365621	0.626430779339474