AthRiboNC - lncRNA: AT1G04063

Gene Summary:

ncRNA Name: AT1G04063

Parent Gene: AT1G04063

Chromosome: 1

Start: 291594

End: 292061

Strand: -

Gemone reference: TAIR10

Genomic Sequence:
TCTCTTCAAAAACCCTCATGCTTCTCTCTTAAAGAAACTTAGTCGCCGCTGATTGTGTTATCGGTTCTGGTGGCTCTTTTAACACCAAAATCGGAATTTTTTAGTTTTTTCGAGCTGTATTTTCGTTTGCCTTCGTTTATGCTACATATAGTTTTTTTCTTAACATATATGTCAGTACAATGTAATAATTTTTTTTTTTAGTTTTCTCGTAACATGTACCCTACTACTTTTTTTTTCCAACAGTTTATCATATACTAACTCTTTATGTAAACTCGCATGTTAATCATAAAAAAAACATTAGTTAAATATTTGACCTCAAATATAATAATGACATGCACAGTACATTGGATATATGTTTGGATGTTTTTATAATGTTGAGGTACTTGTGGTTTCGGCAAATGTGATTTGGTGGTCCCTTTTTGGTCAGCGTTATTCTTGTTAAAAATCTCTCTTTTGGCCCTTTCCTTT

Transcript Information:

Transcript Name: AT1G04063.1

Sequence:
TCTCTTCAAAAACCCTCATGCTTCTCTCTTAAAGAAACTTAGTCGCCGCTGATTGTGTTATCGGTTCTGGTGGCTCTTTTAACACCAAAATCGGAATTTTTTAGTTTTTTCGAGCTGTATTTTCGTTTGCCTTCGTTTATGCTACATATAGTTTTTTTCTTAACATATATGTCAGTACAATGTAATAATTTTTTTTTTTAGTTTTCTCGTAACATGTACCCTACTACTTTTTTTTTCCAACAGTTTATCATATACTAACTCTTTATGTAAACTCGCATGTTAATCATAAAAAAAACATTAGTTAAATATTTGACCTCAAATATAATAATGACATGCACAGTACATTGGATATATGTTTGGATGTTTTTATAATGTTGAGGTACTTGTGGTTTCGGCAAATGTGATTTGGTGGTCCCTTTTTGGTCAGCGTTATTCTTGTTAAAAATCTCTCTTTTGGCCCTTTCCTTT

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length
AT1G04063.1	214	258	ATG	14
AT1G04063.1	277	372	ATG	31
AT1G04063.1	353	442	ATG	29
AT1G04063.1	333	404	ATG	23

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.1094990640289362

Standard Deviation:0.6428589104099093

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT2G08360	0.811856536899581	0.188727129765308	0.101310944248509
AT2G26720	0.788282613281583	0.149092425942664	0.111047338254145
AT1G04257	0.785380508050415	0.144757458067578	0.204665729594243
AT5G11370	0.778967900552326	0.135567783106741	0.0317641394969538
AT1G54957	0.777542319539885	0.133595640544204	0.096824752083606
AT5G06975	0.774642223859257	0.129660987547005	0.198048192083089
AT3G44785	0.774248749832345	0.129135040252144	0.121885213668149
AT2G24670	0.765777034630043	0.11825477960263	0.053601875686613
AT5G63230	0.76308219424778	0.114966301127702	0.0425428804019863
AT2G24683	0.750576481616523	0.100730181779885	0.202299994239306
AT3G32330	0.74952316284275	0.0996048460763653	0.231957359213017
AT3G11405	0.747105251609455	0.0970631348374682	0.0427851364692025
AT1G06133	0.746073858775107	0.095996320322208	0.229739552331879
AT3G22010	0.746017960628448	0.0959387966933581	0.160066885864817
AT1G72855	0.740944838159722	0.0908420685096128	0.0771413349698082
AT1G50760	0.740597378751109	0.0905018307735432	0.0470437043531671
AT1G05127	0.739036755991872	0.0889873571006431	0.206690633224417
AT3G25716	0.733784063877567	0.084051642580448	0.0857866279468781
AT3G15960	0.733348441628107	0.0836532825892775	0.0964155515793443
AT3G02242	0.733178057081377	0.0834979224276764	0.112772668658423