AthRiboNC - lncRNA: AT1G04083

Gene Summary:

ncRNA Name: AT1G04083

Parent Gene: AT1G04083

Chromosome: 1

Start: 314189

End: 314463

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
ACTCGGGGATGCAGACACAAACGAACGTAGTCATATCCTACGTAATGGAGCCAAATGTGTCAATTTCTTATCTTAAAATGCAGAGTTTGTTAGATATGTATCAGAATTTTCACTAATGCAAATGAATGCTGTCAAACCGTATGCTACAGAACAATGTGAAGAATCTAAAACTAAACTTCACGAACAGAGTTAAGAAAACAGTCAATGAGTACTGAAAATAGCAAAGAACTTAAACAATTGAAAAAATGTTACCGGGTCTTTGAATTGCCGATTTA

Transcript Information:

Transcript Name: AT1G04083.1

Sequence:
ACTCGGGGATGCAGACACAAACGAACGTAGTCATATCCTACGTAATGGAGCCAAATGTGTCAATTTCTTATCTTAAAATGCAGAGTTTGTTAGATATGTATCAGAATTTTCACTAATGCAAATGAATGCTGTCAAACCGTATGCTACAGAACAATGTGAAGAATCTAAAACTAAACTTCACGAACAGAGTTAAGAAAACAGTCAATGAGTACTGAAAATAGCAAAGAACTTAAACAATTGAAAAAATGTTACCGGGTCTTTGAATTGCCGATTTA

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length
AT1G04083.1	55	93	ATG	12
AT1G04083.1	116	193	ATG	25
AT1G04083.1	9	116	ATG	35
AT1G04083.1	126	215	ATG	29

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.05714987609934947

Standard Deviation:0.578362513353203

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT1G05343	0.992343017005148	0.940360858314628	0.465151764788939
AT1G06823	0.99090267956328	0.929497064479136	0.472014716406052
AT4G31196	0.989548881788571	0.919386281075382	0.45288377834316
AT2G35970	0.985872746985486	0.89241506021294	0.47608892797173
AT3G04265	0.985192734789898	0.887502538897151	0.481497536564848
AT3G07295	0.976746539153983	0.828428533260347	0.480718836985588
AT5G07585	0.975698232643227	0.821342217787357	0.423102551562866
AT3G45673	0.975009949565917	0.816718475425667	0.462754296481651
AT3G03755	0.973451771147877	0.8063350106732	0.489548656083234
AT5G06915	0.973451771147877	0.8063350106732	0.489548656083234
AT5G06715	0.973451771147877	0.8063350106732	0.489548656083234
AT5G36001	0.973451771147877	0.8063350106732	0.489548656083234
AT4G07185	0.973451771147877	0.8063350106732	0.489548656083234
AT3G46860	0.973451771147877	0.8063350106732	0.489548656083234
AT3G25719	0.973451771147877	0.8063350106732	0.489548656083234
AT1G09493	0.973451771147877	0.8063350106732	0.489548656083234
AT1G04847	0.973451771147877	0.8063350106732	0.489548656083234
AT3G30705	0.971382410261346	0.792723768936039	0.388201759076529
AT4G05980	0.969804880875622	0.782483023788257	0.490020064974044
AT1G08403	0.965909503271127	0.757689923769971	0.449813439225112