AthRiboNC - miRNA: ath-MIR838

Gene Summary:

ncRNA Name: ath-MIR838

Parent Gene: AT1G01046

Chromosome: 1

Start: 28500

End: 28706

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
TACTTTTCTAATATCACGAGGACTTACATGGCCTCAAGTCACCTGTGGTGTTGTGCAAGAAGGAGAAGCAAAGTCTGTCTATGTATTATGAGATAGCTACTTCTATGGCTAGGATATATGTTGTACAAGACCGGCTTTTCTTCTACTTCTTGCACAACCTGAGGTTATTGAGGCTATACAAGTCTTCTTCTATAATGTTATTTATTA

Transcript Information:

Transcript Name: at1g01046

Sequence:
TACTTTTCTAATATCACGAGGACTTACATGGCCTCAAGTCACCTGTGGTGTTGTGCAAGAAGGAGAAGCAAAGTCTGTCTATGTATTATGAGATAGCTACTTCTATGGCTAGGATATATGTTGTACAAGACCGGCTTTTCTTCTACTTCTTGCACAACCTGAGGTTATTGAGGCTATACAAGTCTTCTTCTATAATGTTATTTATTA

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at1g01046	28	96	ATG	22
at1g01046	118	162	ATG	14

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 1.0819564989876096

Standard Deviation:3.1905225253597775

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT5G30341	0.601470937610991	0.0171284151471172	0.0235340452733844
AT2G03932	0.553944464806295	0.00886604266619057	0.0232930613468843
AT2G21700	0.5421416279681	0.00746280415203418	0.0225931997797479
AT1G54720	0.536669951846003	0.00688110585024238	0.0162050168431398
AT2G02900	0.504418790683391	0.0041911195862014	0.0151546896359426
AT3G26539	0.485226619657287	0.00307296028060904	0.00326642411533931
AT1G08743	0.480606597991584	0.00284654353077838	0.00475195031633133
AT5G48750	0.468969022072502	0.00233966268927985	0.00687133623572872
ath_circ_012044	0.466629123758418	0.00224788830409047	0.00277501190084854
AT5G40945	0.454005833628581	0.00180505926675424	0.00299837717492762
AT5G20852	0.447115955317737	0.00159720750951011	0.00480932438766514
ATCG00100	0.443447912309464	0.00149534332740647	0.00503215725999058
ath_circ_049691	0.44114243935835	0.00143426936671306	0.00459287222551804
AT1G07517	0.433687035288819	0.00125144427473869	0.00390034224884094
AT1G35242	0.428728783694406	0.00114146115019496	0.00129405331915164
AT3G08915	0.426352680420673	0.00109182235300177	0.00194686065175937
AT1G09227	0.423984443300099	0.00104423771610114	0.00360340341200645
ath_circ_012330	0.423830767561844	0.00104121363207624	0.00766056223837297
ath_circ_050666	0.423775969527337	0.00104013715245794	0.00813785655620661
AT4G04835	0.419432608112121	0.000957850053277979	0.00116767010136678