AthRiboNC - miRNA: ath-MIR407

Gene Summary:

ncRNA Name: ath-MIR407

Parent Gene: AT2G32698

Chromosome: 2

Start: 13866205

End: 13866467

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
TGGGAAAAATGTTAAAAAAATCGCCAACTTTTAAAAATGGGACAAAAAAATCGCCAACTCCTGAAATGTCATTTAAATCATATACTTTTGGTTGACTTTTCCAGAAAGATAATAAAGCAAAGATTCGTAATCAACAAAACTTTGCTCTGTTATCTTTCTAAAGAACTCAATCAAAAGTATGTGATTAAAACGACATTTCAGGAGTTGGTGATTTTTCATCCCATTTTTCAAAGTTGGCAATTTTTTTGACATTTTTTCCAATG

Transcript Information:

Transcript Name: at2g32698

Sequence:
TGGGAAAAATGTTAAAAAAATCGCCAACTTTTAAAAATGGGACAAAAAAATCGCCAACTCCTGAAATGTCATTTAAATCATATACTTTTGGTTGACTTTTCCAGAAAGATAATAAAGCAAAGATTCGTAATCAACAAAACTTTGCTCTGTTATCTTTCTAAAGAACTCAATCAAAAGTATGTGATTAAAACGACATTTCAGGAGTTGGTGATTTTTCATCCCATTTTTCAAAGTTGGCAATTTTTTTGACATTTTTTCCAATG

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at2g32698	37	249	ATG	70
at2g32698	9	95	ATG	28

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 1.1168745858651943

Standard Deviation:16.10025026108512

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT1G05537	0.999840454420637	0.998724347871883	0.66075834231009
AT1G07247	0.999840454420637	0.998724347871883	0.66075834231009
AT1G08337	0.999840454420637	0.998724347871883	0.66075834231009
AT4G01595	0.999840454420637	0.998724347871883	0.66075834231009
AT1G08223	0.999826920048389	0.998616198883569	0.660805783901855
AT5G09015	0.999801514434066	0.998413218137294	0.660712491628017
AT1G06797	0.999765900427963	0.998128737178541	0.66036794488871
AT5G04915	0.999732024592159	0.997858206362934	0.663839517252663
AT5G02145	0.999731527581564	0.997854237737535	0.659844936839925
AT5G05075	0.99972037040726	0.997765151429927	0.661904982360331
AT4G36370	0.999695162106795	0.997563897200585	0.660289972432252
AT5G24575	0.999673776762334	0.997393191960121	0.660809940699839
AT4G00163	0.999673053697192	0.997387420649995	0.660819785914615
AT3G08685	0.999395917370392	0.995177544270909	0.660423442185375
AT3G06155	0.99926463765784	0.994132220232294	0.668111615756106
AT3G00980	0.999247176703237	0.993993258557213	0.659864448159564
AT4G05260	0.999001777193159	0.992042062478377	0.670028627816148
AT1G08343	0.998966165041355	0.991759185344177	0.665523332152409
AT1G06527	0.998961651714941	0.991723339788614	0.659483191708233
AT2G15450	0.99894764895283	0.991612134841321	0.659825154426964