AthRiboNC - miRNA: ath-MIR447b

Gene Summary:

ncRNA Name: ath-MIR447b

Parent Gene: AT4G03455

Chromosome: 4

Start: 1535426

End: 1535661

Strand: -

Gemone reference: TAIR10

Genomic Sequence:
CATTCTTAATATACAATACTACTTTTTCATCCATTAATCCCCTTACAATGTCGAGTAAACGAAGCATCTGTCCCCTGGTATTGTCTTCGAGCTTGGTGTGTTTTTCTAGCCAGCCCCAAGTTCTCGAGTTGATCATTGTTTGTATTCTGACACATTATTTGGGGACGAGATGTTTTGTTGACTCGATATAAGAAGGGGCTTTATGGAAGAAATTGTAGTATTATATATTGAGAATG

Transcript Information:

Transcript Name: at4g03455

Sequence:
CATTCTTAATATACAATACTACTTTTTCATCCATTAATCCCCTTACAATGTCGAGTAAACGAAGCATCTGTCCCCTGGTATTGTCTTCGAGCTTGGTGTGTTTTTCTAGCCAGCCCCAAGTTCTCGAGTTGATCATTGTTTGTATTCTGACACATTATTTGGGGACGAGATGTTTTGTTGACTCGATATAAGAAGGGGCTTTATGGAAGAAATTGTAGTATTATATATTGAGAATG

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at4g03455	48	191	ATG	47

Detected by RiboTish based on sequence information and Ribo-seq data:

Transcript	Start	End	Start Codon	Peptide Length	Ribo P Value	Frame Q Value	Sequence
at4g03455	48	191	ATG	47	0.01093556357514182	0.004321657170138406

Expression:

Ignore zero expression

Mean TPM: 0.07489772239609332

Standard Deviation:0.44817774606243366

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
ath_circ_025562	0.664415773091139	0.0379768965618925	0.0446964911001488
ATMG00285	0.596123993351812	0.0159475075543942	0.0603707280041298
ath_circ_020878	0.593348899278471	0.0153631803331762	0.0610473845765921
AT1G62895	0.592721154940994	0.0152336307380798	0.0343215193239687
AT3G19613	0.591521243053547	0.0149886585772139	0.0604266847711919
AT5G66220	0.591006658485968	0.0148846624594823	0.0600587027469728
AT1G04397	0.57790448762309	0.0124408065031435	0.0535874702892931
AT3G24450	0.575716421626284	0.012068934739283	0.0136539485264842
AT3G08430	0.567965764974171	0.0108287236285366	0.0505308270933514
AT5G28345	0.564003204279253	0.0102388827759703	0.0489085814151861
ath_circ_048506	0.551356212109642	0.00854000602213728	0.00631206619254972
AT1G23650	0.543972850504905	0.00766686467980795	0.00466680792578587
AT2G05185	0.543288318545433	0.00759002030250659	0.0106845406075938
AT4G32460	0.540397283532047	0.00727286050780527	0.0163073171174926
AT5G04085	0.537618357744612	0.00697899230091673	0.0121629548854526
ATMG01000	0.52635703865845	0.00589173871941314	0.0128843449749617
AT5G01425	0.523161796440888	0.00561161902783613	0.0299072881452926
AT5G24580	0.522553958279392	0.00555967153820671	0.0161797560393025
AT1G68710	0.51843656501997	0.00521873201054368	0.0148356055257517
AT5G19740	0.515378571054554	0.00497749527397576	0.0147350116865026