AthRiboNC - miRNA: ath-MIR4221

Gene Summary:

ncRNA Name: ath-MIR4221

Parent Gene: AT4G06260

Chromosome: 4

Start: 8460516

End: 8460662

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
TAGTATATCCGTTTCACAGTTTTTCCTCTGTTGAATTCTTGCACTAGCTTTCATATGGGCCATATTAAGTTACATGTGGGTGGGTGCCGTAACAGTGCAGCAACCATTCTGCTAGCTTGTGCAAGAGTTTAAAAGTGGTGAAACTTT

Transcript Information:

Transcript Name: at4g06260

Sequence:
TAGTATATCCGTTTCACAGTTTTTCCTCTGTTGAATTCTTGCACTAGCTTTCATATGGGCCATATTAAGTTACATGTGGGTGGGTGCCGTAACAGTGCAGCAACCATTCTGCTAGCTTGTGCAAGAGTTTAAAAGTGGTGAAACTTT

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at4g06260	74	115	ATG	13

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.016216140297969226

Standard Deviation:0.14984776892324625

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
ath_circ_028428	0.861670684183189	0.303899888550978	0.23888920902337
ath_circ_011463	0.744081593810355	0.0939646483812782	0.240352923529139
ath_circ_047409	0.744081593810355	0.0939646483812782	0.240352923529139
ath_circ_051080	0.744081593810355	0.0939646483812782	0.240352923529139
ath_circ_051404	0.744081593810355	0.0939646483812782	0.240352923529139
ath_circ_024601	0.652172074165112	0.0327263512965193	0.114985837113635
AT2G35744	0.635233733872972	0.0265135831976726	0.0518180310428894
ath_circ_049654	0.632259981211648	0.0255367457579599	0.0743018083404473
ath_circ_050562	0.632259981211648	0.0255367457579599	0.0743018083404473
ath_circ_036922	0.632259981211648	0.0255367457579599	0.0743018083404473
ath_circ_029478	0.632259981211648	0.0255367457579599	0.0743018083404473
AT4G06995	0.632259981211648	0.0255367457579599	0.0743018083404473
ath_circ_048466	0.629968047792583	0.0248055110837824	0.0164741930640105
ath_circ_049995	0.599292747070801	0.0166384234709869	0.0540504927216829
ath_circ_048679	0.595453665066452	0.0158046099371177	0.0615096699155105
AT5G03315	0.591044913432304	0.0148923718952009	0.0486124035229994
AT3G07095	0.574751848764354	0.0119081148675465	0.0107521391018413
AT4G00165	0.562254368451404	0.00998763602287029	0.0229225381498391
ath_circ_039366	0.546304772055026	0.00793377634182502	0.0272701283689762
ath_circ_025774	0.534941947824751	0.00670584078293354	0.012556252017175