AthRiboNC - miRNA: ath-MIR4240

Gene Summary:

ncRNA Name: ath-MIR4240

Parent Gene: AT4G06915

Chromosome: 4

Start: 10711558

End: 10711762

Strand: -

Gemone reference: TAIR10

Genomic Sequence:
CTTTCGTAGCCATGAAGTTAATGGCTAGAGTGACTAGACCCGTAACATTACCATATATCATTTGAACTGAAATTTGTTTGTTCTGAGGATTATTTTTCAAGATATCAAAACGAAGATAAGTGGCTGCACAAACTTTTTTTAGCGAATATATCGTTATGTTATCGGGTCTAGCACTCTATCCACTGATTTCATGACCACGAGCCTC

Transcript Information:

Transcript Name: at4g06915

Sequence:
CTTTCGTAGCCATGAAGTTAATGGCTAGAGTGACTAGACCCGTAACATTACCATATATCATTTGAACTGAAATTTGTTTGTTCTGAGGATTATTTTTCAAGATATCAAAACGAAGATAAGTGGCTGCACAAACTTTTTTTAGCGAATATATCGTTATGTTATCGGGTCTAGCACTCTATCCACTGATTTCATGACCACGAGCCTC

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at4g06915	12	65	ATG	17
at4g06915	156	194	ATG	12

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.1488418795867576

Standard Deviation:1.2358011654655834

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT2G09575	0.956177706590105	0.698729228781534	0.202654046668617
AT3G06605	0.944253527823736	0.631988140352378	0.22599016279529
AT5G14995	0.943790258735559	0.629511870574892	0.237508567480351
AT3G49744	0.925341385156285	0.537546314495545	0.301957120388678
AT1G05343	0.901309145420292	0.435502068756672	0.351060597234778
AT4G05415	0.90033811223852	0.431762656682729	0.300948744299097
AT4G31196	0.899815671483273	0.429762405317511	0.341350678801631
AT1G06823	0.898291461322449	0.423972972735602	0.352385367593408
AT1G04083	0.893312234027037	0.405533050010767	0.339830824577412
AT2G35970	0.892564446191103	0.402825233630626	0.342289578776177
AT3G04265	0.891340289087346	0.398426575450992	0.345183514040249
AT5G07585	0.890305038276948	0.394739556284948	0.305599622456399
AT1G05683	0.889759474624311	0.392808584504261	0.207342445436677
AT4G01245	0.889352139720536	0.391372254720411	0.218885150174471
AT3G45673	0.88525380173521	0.377174570218413	0.306158450788074
AT3G07295	0.883291699068006	0.370538375026166	0.324406973021221
AT3G30705	0.880281947459271	0.36055735952696	0.291732433332837
AT5G09455	0.878857177080527	0.355915112965378	0.275568280610643
AT1G04847	0.878843344691661	0.355870301269623	0.324702465084136
AT1G09493	0.878843344691661	0.355870301269623	0.324702465084136