AthRiboNC - miRNA: ath-MIR5641

Gene Summary:

ncRNA Name: ath-MIR5641

Parent Gene: AT5G04145

Chromosome: 5

Start: 9022836

End: 9023326

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
ACGAAACAATAAAATCCCCAATTCAATTTTGAAATCCCTAATTCTATCATCTTCTTCACTCTTCTTCCATAGCTAATTGAAATCCCAAATTCTTCTATCTTCCATATCTTCTTCTATCATTTTCTTTAAGTTTGATTTCGAAATCTCTAATTTTATCATCTTCTTCCATTGTTTGATTTCGAAATCCTAATTCTTCCATCTTCATCCATCTTTCTAGCTCCGTCGATTACCAAGTATCTCCTCCATGTGAATATACTTATACCAAAAGTGGTCCACGTGAGGAAGAATCTTCACAGCTCAATCCCAAACGTTCCTCGCATGGTTGACGTCTTTGTTCCATAGCTTCATTAAGCAACCATGGATGATAAAAGATGATATGAAAGCTATGGAAGTTTGATTAAGTTAGAAGATGGACGAATTAGGGATTGAAGATGGAAGAAGATGATAGAATTAGGGATTTTAAAATTGAATTGGGGATTTTGCTGTTTCAT

Transcript Information:

Transcript Name: at5g04145

Sequence:
ACGAAACAATAAAATCCCCAATTCAATTTTGAAATCCCTAATTCTATCATCTTCTTCACTCTTCTTCCATAGCTAATTGAAATCCCAAATTCTTCTATCTTCCATATCTTCTTCTATCATTTTCTTTAAGTTTGATTTCGAAATCTCTAATTTTATCATCTTCTTCCATTGTTTGATTTCGAAATCCTAATTCTTCCATCTTCATCCATCTTTCTAGCTCCGTCGATTACCAAGTATCTCCTCCATGTGAATATACTTATACCAAAAGTGGTCCACGTGAGGAAGAATCTTCACAGCTCAATCCCAAACGTTCCTCGCATGGTTGACGTCTTTGTTCCATAGCTTCATTAAGCAACCATGGATGATAAAAGATGATATGAAAGCTATGGAAGTTTGATTAAGTTAGAAGATGGACGAATTAGGGATTGAAGATGGAAGAAGATGATAGAATTAGGGATTTTAAAATTGAATTGGGGATTTTGCTGTTTCAT

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at5g04145	410	445	ATG	11

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.06429241506937967

Standard Deviation:0.4451316890779481

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT5G02355	0.948538946085779	0.655301766059578	0.280836179131327
AT1G64130	0.943137695336255	0.626038186468944	0.232231724483638
AT5G02135	0.941530750036819	0.617555605062363	0.278703174944377
AT4G09675	0.939972068187034	0.609424048371548	0.288669255988249
AT5G01975	0.938789235051259	0.603315951025751	0.259832822501199
AT1G55591	0.938187156445397	0.600227468159573	0.292715027006062
ATMG00700	0.938091850535232	0.599739847840429	0.262247699678408
AT2G07485	0.936073902512852	0.589496321202927	0.225388025741174
AT5G08385	0.932205208976052	0.570285333780476	0.26165395140644
AT4G07220	0.931897744088402	0.568782313336311	0.239099003821152
AT3G04935	0.931897744088402	0.56878231333631	0.239099003821152
AT4G00651	0.918994238223051	0.50874752347709	0.227158571023431
AT1G34910	0.917788231157833	0.50343090788986	0.265450847859843
AT5G01080	0.916584012142475	0.498170746125873	0.277362337407379
ATMG00770	0.915999699123465	0.495635777178419	0.280696443618177
AT3G08735	0.911230476212975	0.475363564220812	0.19918359010855
AT3G11350	0.910523757216463	0.472422152951104	0.23878275126125
AT5G06880	0.906088647942478	0.454323827615006	0.254690082279812
AT4G09865	0.903910010454837	0.445657857943524	0.244066939339309
AT3G59884	0.90208534847356	0.438511546270912	0.271779858658304