AthRiboNC - miRNA: ath-MIR166c

Gene Summary:

ncRNA Name: ath-MIR166c

Parent Gene: AT5G08712

Chromosome: 5

Start: 2838635

End: 2838773

Strand: +

Gemone reference: TAIR10

Genomic Sequence:
GCGATTTAGTGTTGAGAGGATTGTTGTCTGGCTCGAGGTCATGAAGAAGAGAATCACTCGAATTAATTTGGAAGAACAAATTAAGAAAACCCTAGATGATTCTCGGACCAGGCTTCATTCCCCCTAACCTACTTATCGC

Transcript Information:

Transcript Name: at5g08712

Sequence:
GCGATTTAGTGTTGAGAGGATTGTTGTCTGGCTCGAGGTCATGAAGAAGAGAATCACTCGAATTAATTTGGAAGAACAAATTAAGAAAACCCTAGATGATTCTCGGACCAGGCTTCATTCCCCCTAACCTACTTATCGC

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at5g08712	41	127	ATG	28

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.2038485448969029

Standard Deviation:1.331838447878692

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT1G70390	0.781121277391558	0.138595057703847	0.382611611150165
AT2G30360	0.780733105588215	0.138045025680769	0.41682897424037
AT5G07015	0.780733105588215	0.138045025680769	0.41682897424037
ath_circ_025010	0.780733105588215	0.138045025680769	0.41682897424037
ath_circ_025459	0.780733105588215	0.138045025680769	0.41682897424037
ath_circ_048557	0.780733105588215	0.138045025680769	0.41682897424037
ath_circ_050251	0.780733105588215	0.138045025680769	0.41682897424037
ath_circ_051521	0.780733105588215	0.138045025680769	0.41682897424037
ath_circ_050346	0.77870373803989	0.135200430878082	0.410946240475612
ath_circ_049818	0.778401028977569	0.134780545844387	0.41004120775039
AT2G33175	0.777945054369213	0.134150221360523	0.0971624200042976
AT3G20900	0.772094063357005	0.126287889471777	0.388799973409057
AT3G56891	0.770216861047605	0.123852327726289	0.406995305633538
AT2G47200	0.763963291321663	0.116032574594639	0.219415473860435
AT2G38350	0.750300757492494	0.100434536406887	0.327442289754621
AT1G49032	0.746056689268685	0.0959786483272094	0.327760170441302
AT2G06002	0.736735079100214	0.0867942174175782	0.300082404468906
AT2G08965	0.735000114504304	0.0851724723489401	0.296884282600633
AT4G07150	0.731187910731607	0.0817018740216537	0.280271290168829
AT5G64190	0.731095473538243	0.0816192801933541	0.341636464435424