AthRiboNC - miRNA: ath-MIR156d

ncRNA Name: ath-MIR156d

Parent Gene: AT5G10945

Chromosome: 5

Start: 3456632

End: 3456749

Strand: -

Gemone reference: TAIR10

Genomic Sequence:
GATGGGGGAAAAGAAGTTGACAGAAGAGAGTGAGCACACAAAGGGGAAGTTGTATAAAAGTTTTGTATATGGTTGCTTTTGCGTGCTCACTCTCTTTTTGTCATAACTTCTCCTTCAT

Transcript Name: at5g10945

Sequence:
GATGGGGGAAAAGAAGTTGACAGAAGAGAGTGAGCACACAAAGGGGAAGTTGTATAAAAGTTTTGTATATGGTTGCTTTTGCGTGCTCACTCTCTTTTTGTCATAACTTCTCCTTCAT

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at5g10945	2	106	ATG	34

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Ignore zero expression

Mean TPM: 0.8456938014689274

Standard Deviation:6.407902235725244

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT2G07753	0.90627931060265	0.455089195663353	0.447650629706328
ATMG01240	0.904489387957632	0.447948211002353	0.299186312543088
AT5G08875	0.88233633731808	0.367344313546076	0.40074926074724
ath_circ_012319	0.872269674603147	0.335124510141746	0.534680145561749
ath_circ_024486	0.872269674603147	0.335124510141746	0.534680145561749
ath_circ_025777	0.872269674603147	0.335124510141746	0.534680145561749
ath_circ_025306	0.866102715817925	0.31663229099213	0.504499423972639
AT2G28056	0.852607508723718	0.279250027463219	0.490446480721105
AT2G22496	0.852326812026978	0.278515393547016	0.356064847507593
AT2G08215	0.848798537521039	0.269424435032767	0.459047079621895
AT3G06955	0.826071573940952	0.216841010682874	0.391128196677807
ath_circ_048529	0.819964574424951	0.204343447897956	0.355178284778817
AT3G09725	0.818450380370069	0.201344068015358	0.33967243018243
AT4G31405	0.817654232949239	0.199782533046312	0.296949672277958
ath_circ_050754	0.798624629746935	0.165478508701903	0.261115436976268
ath_circ_025773	0.784487049726712	0.143445269035244	0.289814908591097
ath_circ_024510	0.783667105619474	0.1422502182271	0.283449994414975
ath_circ_024489	0.779215733425431	0.13591322060169	0.248080916703659
AT1G05467	0.740067452559626	0.0899850657399709	0.185486629344438
AT4G31355	0.739235848036058	0.0891793192824433	0.166684930526258