AthRiboNC - miRNA: ath-MIR848

Gene Summary:

ncRNA Name: ath-MIR848

Parent Gene: AT5G13887

Chromosome: 5

Start: 4479397

End: 4479591

Strand: -

Gemone reference: TAIR10

Genomic Sequence:
AAAACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGGTATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTTTA

Transcript Information:

Transcript Name: at5g13887

Sequence:
AAAACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGGTATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTTTA

sORF Information:

Start Codon:

ATG

non-ATG

Predicted by ORFfinder based on sequence information:

Transcript	Start	End	Start Codon	Peptide Length	Sequence
at5g13887	68	145	ATG	25

Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Ignore zero expression

Mean TPM: 0.22938611365306286

Standard Deviation:1.2740961125407357

Co-Expression:

Gene	Pearson Correlation	Adjacency	TOM Similarity
AT1G08637	0.829879039216314	0.224966765277051	0.0391708904751814
AT4G06643	0.764026512550578	0.116109414381192	0.091696341751619
AT1G09047	0.758169787293543	0.109177159782036	0.121797016077048
AT3G28695	0.751943401566391	0.102207136599076	0.188880031872093
AT5G06615	0.748053273667356	0.0980528503385399	0.173545749449857
AT5G06415	0.736952665574662	0.0869994991396629	0.0686333304750474
AT5G39693	0.732820650589428	0.0831728517871199	0.0944544774298305
AT5G41430	0.726618275594395	0.0777052809187282	0.128417038621909
AT5G35695	0.721052396122257	0.0730692408178596	0.195308722609816
AT2G39782	0.712640976727582	0.0665221572756671	0.089230281893241
AT2G04685	0.707173175012143	0.0625469629556957	0.156477562487131
AT1G05233	0.703571372661786	0.0600434008245282	0.198030161010276
AT1G47786	0.69641186449989	0.0553260024101449	0.0906197626460459
AT4G07335	0.695024164189772	0.0544501691424415	0.237847602044123
AT4G12555	0.689726454208182	0.0512171098822396	0.163906660176235
AT1G70944	0.686874230211666	0.0495470479940497	0.0727406343751452
AT1G50080	0.679525122839282	0.0454615398591594	0.0190960030480723
AT1G32582	0.679116686769672	0.0452433979017883	0.0766788685468661
AT1G05123	0.672615527926152	0.0418923876239581	0.196376436992581
AT1G35035	0.671046018599389	0.0411167171045431	0.120410969067867