Gene Summary:

ncRNA Name: ath-MIR169c
Parent Gene: AT5G39635
Chromosome: 5
Start: 15870590
End: 15871000
Strand: -
Gemone reference: TAIR10

Genomic Sequence:
TCGTCCATTATGAGTATTAATTATGGTTAGGGAATCTTACAGAATGAAAATGAAGGTGTGAATGGATTGTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTGTATTATGATTACTCTATATTCGATTTATATTATGGAGATGATGGTTTATATATATTTACTTATCTACATAGTTTTAGTTGATTTTTTTTCGTACGTAATATAATACGAAAAAGTATTTACTTATTTATATATGTGTGTTGGGGCAAGAAGTGTAACCAAGCTAGCCCGGCAAGTCATCTATGGCTATGCAACTGTCTCTTCCTCTCATTCTAGGCTTACGATGACACGTAAAAAATCCCAAATATCACTAATATGATATGAATATGGATGA

Transcript Information:

Transcript Name: at5g39635
Sequence:
TCGTCCATTATGAGTATTAATTATGGTTAGGGAATCTTACAGAATGAAAATGAAGGTGTGAATGGATTGTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTGTATTATGATTACTCTATATTCGATTTATATTATGGAGATGATGGTTTATATATATTTACTTATCTACATAGTTTTAGTTGATTTTTTTTCGTACGTAATATAATACGAAAAAGTATTTACTTATTTATATATGTGTGTTGGGGCAAGAAGTGTAACCAAGCTAGCCCGGCAAGTCATCTATGGCTATGCAACTGTCTCTTCCTCTCATTCTAGGCTTACGATGACACGTAAAAAATCCCAAATATCACTAATATGATATGAATATGGATGA

sORF Information:

Start Codon:
Predicted by ORFfinder based on sequence information:
TranscriptStartEndStart Codon Peptide LengthSequence
at5g3963588243ATG51
at5g39635271396ATG41
at5g396352361ATG12
at5g39635320364ATG14
Detected by RiboTish based on sequence information and Ribo-seq data:

No sORF detected by RiboTish

Expression:

Mean TPM: 0.13902195956032495
Standard Deviation:1.6054362646414788
Stem explantsaerial partinflorescenceleafrootseedlingshoot05101520
TissueStem explantsaerial partinflorescenceleafrootseedlingshootExpression Levels in Different TissuesTissueMean TPM
0.511.522.53>=405101520
Age - Week0.511.522.53>=4Expression Levels at Different AgesAge - WeekMean TPM

Co-Expression:

GenePearson CorrelationAdjacencyTOM Similarity
AT5G021150.9829621915286470.8715544170929260.543597722532141
AT4G070900.9824650852545770.868034533431550.556435629381021
AT1G076930.9810514237497120.8580926440892090.541939624457679
AT2G189200.9790224982498020.8439979216032180.545471174749893
AT5G282880.9786564495588420.8414767101234460.537866961658479
AT2G090500.9781171106384830.8377739463103030.544457706311452
AT2G086700.9780872543630750.8375693889024170.541490211204174
AT4G054550.9775296834671310.8337572660205420.519586392785087
AT2G089850.9775055049058960.8335923007505090.51327816535372
AT3G434900.9770612506436140.8305663257766130.551072132756345
AT1G050850.9753473343782930.8189821024660050.53935801562208
AT2G195720.9746952337214770.8146118790702460.546958274465106
AT5G055850.9732654329474990.8051010480337410.534531767670304
AT5G429550.9725117334836720.8001267660795590.536928348254887
AT2G437300.9708702755367580.7893863973276610.534753246179773
AT1G311100.9707942623882820.7888921001447590.532533209919772
AT4G080280.970762209314080.7886837470790120.514694223179447
AT3G305200.9699870927288950.783659932494180.533469884765615
AT1G115100.9685798922100790.7746108761822310.509178381641256
AT2G063950.9682038276926110.7722081163015670.532170269355193