C3 International Summer School

C3'2012
2012年“作物、芯片、计算机”学术研讨会
2012 International Workshop and Summer School on Crops, Chips and Computers
September 2nd to 9th, 2012
Fujian Agriculture and Forestry University, Fuzhou, China

Fujian Agriculture and Forestry University
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Programme

Sunday 02nd September 2012
  • Registration
    Center for International Academic Exchanges Fujian Agriculture and Forestry University
  • 17:30~            Dinner
Monday 03rd September 2012
  • Registration
    Center for International Academic Exchanges Fujian Agriculture and Forestry University
  • Computer Lab: Crop Scienc Building 601
  • Workshop: Room 601, Crop Science Building (the building of Key Laboratory of Ministry of Education for Genetic, Breeding and Multiple Utilization of Crops)
  • 08:30~09:00  Introduction: Huaqin He & Andrew Harrison
    An overview of what needs to be done at the school and the expected work load on each day.
    Team grouping
    Section 1 (Lectures)
  • 09:00~10:15  Lecture 1
    Introduction to transcriptomics.
    Lecturer: Sean May
  • 10:30~11:45  Lecture 2
    Experimental design & specialish transcriptomics.
    Lecturer: Sean May
  • 12:00~13:30  Lunch
    Section 2 (Practical)
  • 14:00~17:00  Practice 1
    R/Bioconductor introduction.
    Practical: Hugh Shanahan, London University, UK; Dijun Chen, IPK, Germany / Zhejiang University, China
  • 17:30~            Dinner
Tuesday 04th September 2012
    Section 3 (Lectures)
  • 09:00~10:15  Lecture 3
    Bioinformatics & Biophysics of genechips.
    Lecturer: Andrew Harrison
  • 10:30~11:45  Lecture 4
    Next-generation sequencing.
    Lecturer: Andrew Harrison
  • 12:00~13:30  Lunch
    Section 4 (Practical)
  • 13:30~17:00  Practice 2
    To use R/Bioconductor to analyse data (1).
    Practical: Hugh Shanahan, London University, UK; Dijun Chen, IPK, Germany / Zhejiang University, China
  • 17:30~            Dinner
Wednesday 05th September 2012
    Section 5 (Lectures)
  • 09:00~10:30  Lecture 5
    Associative methods in system biology.
    Lecturer: Hugh Shanahan
  • 10:50~11:30  Lecture 6
    Gene ontologies and cloud computing.
    Lecturer: Hugh Shanahan
  • 12:00~13:30  Lunch
    Section 6 (Practical)
  • 13:30~17:00  Practice 3
    To use R/Bioconductor to analyse data (2).
    Practical: Hugh Shanahan, London University, UK; Dijun Chen, IPK, Germany / Zhejiang University, China
  • 17:30~            Dinner
Thursday 06th September 2012
  • Tour
Friday 07th September 2012
    Section 5 (Lectures)
  • 09:00~10:30  Lecture 5
    Practice and Discussion.
    Lecturer: Dijun Chen, IPK, Germany / Zhejiang University, China
  • 10:50~11:30  Lecture 6
    Practice and Discussion.
    Lecturer: Dijun Chen, IPK, Germany / Zhejiang University, China
  • 12:00~13:30  Lunch
    Section 6 (Practical)
  • 13:30~17:00  Practice 3
    To use R/Bioconductor to analyse data (3).
    Practical: Hugh Shanahan, London University, UK; Dijun Chen, IPK, Germany / Zhejiang University, China
  • 17:30~            Dinner
Saturday 08th September 2012
    Section 7 (Chair:Huaqin He)
  • 08:30~09:10
    Opening Ceremony
    Speaker:President Lin, Andrew and Ming Chen

    • Section 8 (Chair:Wanling Yang)
  • 09:10~9:40
    Speaker 1: Hugh Shanahan
    Title: Cloud computing platforms and the analysis of G-stack biases in Affyemtrix GeneChip
  • 09:40~10:10
    Speaker 2: Sean May
    Title: Evidence of neutral transcriptome evolution in plants – a cautionary tale for comparative transcriptomics
  • 10:10~10:30
    Coffee/Tea break

    • Section 9 (Chair:Hugh Shanahan)
  • 10:30~11:00
    Speaker3:Cizhong Jiang
    Title: H2A.Z nucleosome positioning has no impact on genetic variation in Drosophila genome
  • 11:00~11:30
    Speaker4:Kui Lin
    Title: Comparative analysis of genome architecture between closely related genomes: A case study of the cucumber genomes
  • 11:30~12:00
    Speaker 5: Ziding Zhang
    Title: Using profile-based amino acid pair composition to discriminate type-III effectors from pathogenic bacterial genomes
  • 12:00~13:30  Lunch


    Section 10 (Chair:Sean May)

  • 13:30~14:00
    Speaker 6: Andrew Harrison
    Title: What can be learnt from tens of thousands of microarrays in the public domain?
  • 14:00~14:30
    Speaker 7: Wanling Yang
    Title: Bioinformatics and the future of public health
  • 14:30~15:00
    Speaker 8: Ming Chen
    Title: RiceNet, Genome-scale Multi-level Network Reconstruction of Rice
  • 15:00~15:20
    Coffee/Tea break

    • Section 11 (Chair:Andrew Harrison)
  • 15:20~15:50
    Speaker 9: Zhiliang Ji
    Title: Discovery of Novel Therapeutic Applications of Yadanzi (Brucea Javanica) by Exploring Its Potential Anti-Tumor Network
  • 15:50~16:20
    Speaker 10: Lingling Chen
    Title: Genome analyses of sweet orange (Citrus sinensis)
  • 16:20~16:50
    Speaker 11:Tiandi Wei
    Title: Evolution of SEFIR Protein Domain: A Horizontal Gene Transfer from Eukaryotes to Prokaryotes
  • 16:50~17:20
    Speaker 12: Weiqi Tang Title:
  • 18:00~20:00  Dinner & Discussion
Sunday 09th September 2012
  • 9:30~11:40  Close session & Awards ceremony (Chair: Ming Chen & Andrew Harrison & Huaqin He)
    Science in the UK, Germany and China, and moving among countries; career structures in these countries. We expect to recruit European students who may be considering spending part of their careers in China and we hope some of the Chinese students similarly look to spend part of their careers in Europea.
  • 12:00~          Lunch & Farewell
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