C3 2013

C3'2013
2013年“作物、芯片、计算机”学术研讨会
2013 International Workshop and Summer School on Crops, Chips and Computers
September 8^th to 15^th, 2013
Inner Mongolian University for the Nationalities, Tongliao, China

Fujian Agriculture and Forestry University

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Programme

Programme

Sunday 8^th September 2013

Registration
Inner Mongolian University for the Nationalities
17:30~ Dinner

Monday 9^th September 2013

Registration
Inner Mongolian University for the Nationalities
Computer Lab (Room 528, the Building of Sci & Tech) :
08:30~09:00 Introduction: Ming Chen & Andrew Harrison
An overview of what needs to be done at the school and the expected work load on each day.
Team grouping
Section 1 (Lectures)
09:00~10:15 Lecture 1
Introduction to transcriptomics.
Lecturer: Sean May
10:30~11:45 Lecture 2
Experimental design.
Lecturer: Sean May
12:00~13:30 Lunch
Section 2 (Practical)
14:30~17:30 Practice 1
R/Bioconductor introduction.
Practical: Hugh Shanahan; Lili Liu
18:00~ Dinner

Tuesday 10^th Septembert 2013

Section 3 (Lectures)

09:00~10:15 Lecture 3
Bioinformatics & Biophysics of genechips.
Lecturer: Andrew Harrison
10:30~11:45 Lecture 4
Next-generation sequencing.
Lecturer: Andrew Harrison
12:00~13:30 Lunch
Section 4 (Practical)
14:30~17:30 Practice 2
To use R/Bioconductor to analyse data (1).
Practical: Sean May; Lili Liu
18:00~ Dinner

Wensday 11^th September 2013

Section 5 (Lectures)

09:00~10:30 Lecture 5
Statistical methods in high throughput analysis.
Lecturer: Hugh Shanahan
10:50~11:30 Lecture 6
Application of high throughput analyses in the diagnostic of allergy.
Lecturer: Marcos Alcocer
12:00~13:30 Lunch
Section 6 (Practical)
14:30~16:00 Practice 3
Demonstration.
Lecturer: Marcos Alcocer.
16:00~17:00 Practice 4
To use R/Bioconductor to analyse data (2).
Lecturer: Hugh Shanahan; Lili Liu
18:00~ Dinner

Thursday 12^th September 2013

Section 7 (Lectures)

09:00~10:30 Lecture 7
Gene ontologies and clouds.
Lecturer: Hugh
10:50~11:30 Lecture 8
Practice and Discussion.
Lecturer:
12:00~13:30 Lunch
Section 8 (Practical)
14:30~17:30 Practice 5
To use R/Bioconductor to analyse data (3).
Practical: Hugh Shanahan; Lili Liu
18:00~ Dinner

Friday 13^th September 2013

Workshop Day

(Meeting Room, New Library)

Section 9 (Chair: Ming Chen)

08:30~09:10
Opening Ceremony
Speaker: President Fu & Vice President Chen
09:10~9:40
Speaker 1: Xianfeng (Jeff) Chen, Institute for Green Energy and Clean Environment, USA
Title: Plant Genomics, Bioinformatics, and Systems Biology
09:40~10:10
Speaker 2: Sean May, University of Nottingham, UK
Title: AIP - Physical Resources: In serch of the missing links
10:10~10:30
Coffee/Tea break

Section 10 (Chair: Andrew Harrison)

10:30~10:50
Speaker 3: Ziding Zhang, China Agricultural University
Title: Sequence and Structural Propensities of Ubiquitination Sites
10:50~11:10
Speaker 4: Fanjuan Meng, Northeast Forestry University
Title: Proteomic Response of Diploid and Tetraploid Black Locust (Robinia pseudoacacia L.) Subjected to Salt Stress
11:10~11:30
Speaker 5: Marcos Alcocer, University of Nottingham, UK
Title: Food Allergens, Lessons from the Brazil Nut Model System
11:30~11:50
Speaker 6: Yujie Chen / Yongsheng Chen, Inner Mongolian University for the Nationalities
Title: Molecular Studies on Castor
12:00~13:30 Lunch

Section 11 (Chair: Ziding Zhang )
14:30~14:50
Speaker 7: Yanji Liu, Shenyang Agricultural University
Title: Limits and breakthrough of modern life science
14:50~15:10
Speaker 8: Andrew Harrison, University of Essex, UK
Title: Mind-altering Microbes
15:10~15:30
Speaker 9: Ling-ling Chen, Huazhong Agricultural University
Title: Citrus sinensis Annotation Project (CAP): a comprehensive resource for sweet orange genome
15:30~15:50
Speaker 10: Wu Dong, Inner Mongolian University for the Nationalities
Title: CYPs Gene Regulation by BaP and TCDD in Teleosts
15:50~16:10
Coffee/Tea break

Section 12 (Chair: Sean May)

16:10~16:30
Speaker 11: Hugh Shanahan, Royal Holloway, University of London, UK
Title: Integrating R with a Platform as a Service Cloud Computing Platform for Bioinformatics Applications
16:30~16:50
Speaker 12: Fei Liu, Harbin Institute of Technology
Title: Colored Petri Nets for Multiscale Systems Biology
16:50~17:10
Speaker 13: Zhen Chen, China Agricultural University
Title: ZincExplorer: an accurate hybrid method to improve the prediction of zinc-binding sites from protein sequences
17:10~17:30
Speaker 14: Lili Liu, Zhejiang University
Title: Construction of the Rice Genome-scale Multiple Level Regulatory Network
18:00~20:00 Dinner & Discussion

Saturday 14^th September 2013

Tour

Sunday 15^th September 2013

9:30~11:40 Close session & Awards ceremony
Science in the UK, Germany and China, and moving among countries; career structures in these countries. We expect to recruit European students who may be considering spending part of their careers in China and we hope some of the Chinese students similarly look to spend part of their careers in Europea.
12:00~ Lunch & Farewell