C3-B3 2014

C3-B3'2014
2014年“生物大数据“国际暑期研习班及学术研讨会
2014 International Workshop and Summer School on "Biological Big Bytes"

a satellite meeting of the international workshop/summer school on Crops, Chips & Comp
August 17^th to 23 ^th, 2014
Harbin Institute of Technology , Harbin, China

Fujian Agriculture and Forestry University

Home

Programme

Sunday 17^th August 2014

Registration
Harbin Institute of Technology
17:30~ Dinner

Monday 18^th August 2014

Registration
Harbin Institute of Technology, Classroom B201, Main Bldg
08:30~09:00 Introduction: Ming Chen & Andrew Harrison & Dechang Xu
An overview of what needs to be done at the school and the expected work load on each day.
Team grouping
Section 1 (Lectures)
09:00~10:15 Lecture 1
history of science, technology and data
Lecturer: Andrew Harrison
10:30~11:45 Lecture 2
practicalities of scientific data and the wider zeitgeist of data.
Lecturer: Andrew Harrison
12:00~13:30 Lunch
Section 2 (Practical)
14:30~17:30 Practice 1
practicalities of scientific data and the wider zeitgeist of data.
Lecturer: Andrew Harrison
18:00~ Dinner

Tuesday 19^th August 2014

Section 3 (Lectures)

09:00~10:00 Lecture 3
Files vs Databases / SQL vs NoSQL.
Lecturer: Adam Carter
10:10~11:00 Lecture 4
An introduction to SQL & Database Design. An introduction to sed, awk and grep
Lecturer: Andrew Harrison
12:00~13:30 Lunch
Section 4 ( Lecture & Practical)
14:30~17:00 Practice 2
File naming, versioning and backing up. Data and metadata preparation and publishing, persistent identifiers and citation, linking to articles etc.
Practical: Louise Corti
17:00~17:30 Lecture 5
CELLmicrocosmos Workshop: Cell Modeling at the Mesoscopic and Functional Level
Lecturer: Björn Sommer
18:00~ Dinner

Wensday 20 ^th August 2014

Workshop Day

(Meeting Room 214, Student Acitivity Center)

Section 5 (Chair: Dechang Xu, Andrew Harrison)

08:30~09:10
Opening Ceremony
Speaker: President
09:10~9:40
Speaker 1: Hongzhi Wang
Title: Algorithm Design and Analysis for Big Data
09:40~10:10
Speaker 2: Adam Carter
Title: The EUDAT Collaborative Data Infrastructure
10:10~10:30
Coffee/Tea break

Section 6 (Chair: Huaqin He)

10:30~10:55
Speaker 3: Huaqin He
Title: Genome-wide identification and function of heat-shock proteins in rice
10:55~11:20
Speaker 4: Xiaobao Dong / Ziding Zhang
Title: Revealing Shared and Distinct Network Organizations of Arabidopsis Immune Responses by Integrative Analysis
11:20~11:45
Speaker 5: Andrew Harrison
Title: Mind-altering microbes
11:45~12:10
Speaker 6: Jingjing Wang / Ming Chen
Title: The roles of cross-talking epigenetic patterns in Arabidopsis thaliana
12:30~13:30 Lunch

Section 7 (Chair: Ming Du)
14:30~14:55
Speaker 7: Professionalising digital data curation skills in Universities
Title: Louise Corti
14:55~15:20
Speaker 8: Fei Liu
Title: Colored Petri Nets for Multiscale Systems Biology
15:20~15:45
Speaker 9: Lifeng Xu
Title: Simulating genotype-phenotype interactions using Functional-Structural plant models
15:45~16:10
Speaker 10: Bjorn Sommer
Title: Subcellular Visualization and Localization of Protein-Related Data
16:10~16:30
Coffee/Tea break

Section 8: iGEM MeetUp (Chair: Ming Chen)

16:30~16:55
Speaker 11: Kang Yang
Title: Aspergillus niger is coming!
16:55~17:20
Speaker 12: Zhiqi Liu
Title: E.conan detective
17:20~17:45
Speaker 13: Yifan Wu
Title: Dioxin Detective Y
18:00~20:00 Dinner & Discussion

Thursday 21^th August 2014

Section 9

8:00-11:30: Tour
12:00~13:30 Lunch
Section 10 ( Lecture & Practical)
14:30~16:00 Lecture 6
Big Science with Big Data needs Data Infrastrucutres - Data has value - Data reuse - Data sharing - Distributed data Persistent Identifiers and Metadata (bringing out synergies with Louise's material)..
Lecturer: Adam Carter
16:00~17:00 Practice 3
Data publishing practical.
Practical: Louise Corti.
Lecturer:
18:00~ Dinner

Friday 22 ^th August 2014

Section 7 (Lectures)

09:00~10:30 Lecture 7
Models for Processing Big Data - Moving Compute to the Data - Workflows - Data Intensive Compute Architectures Models for Processing Big Data - MapReduce (includes practical session)
Lecturer: Adam Carter
10:50~11:30 Lecture 8
Practice and Discussion.
Lecturer: Adam Carter
12:00~13:30 Lunch
Section 8 (Practical)
14:30~17:30 Practice 4
Discussion about careers in data Student presentations.
Practical:
18:00~ Dinner

Sunday 23 ^th August 2014

9:30~11:40 Close session & Awards ceremony
Science in the UK, Germany and China, and moving among countries; career structures in these countries. We expect to recruit European students who may be considering spending part of their careers in China and we hope some of the Chinese students similarly look to spend part of their careers in Europea.
12:00~ Lunch & Farewell