Download

Metadata for each cell barcode, including main cell type, lineage, unique fragment, TSS enrichment score and so on.
Danio rerio
zebrafish_metadata.txt.gz
Drosophila melanogaster
drosophila_metadata.txt.gz
Eisenia andrei
earthworm_metadata.txt.gz

Normalized fragment pileup profiles (bigwig format) for each main cell type.
Danio rerio
B_cell.bw
Cardiomyocyte.bw
Cone_photoreceptor_cell.bw
Endothelial_cell.bw
Enterocyte.bw
Epithelial_cell.bw
Erythroid.bw
GABAergic_neuron.bw
Granule_cell.bw
Granulosa_cell.bw
Hepatocyte.bw
Intestinal_bulb_cell.bw
Ionocyte.bw
Keratinocyte.bw
Macrophage.bw
Naive_T_cell.bw
Nephron_cell.bw
Neural_cell.bw
Olfactory_neuron.bw
Oligodendrocyte.bw
Pancreatic_cell.bw
Primordial_germ_cell.bw
Radial_glia.bw
Retina_bipolar_cell.bw
Rod_photoreceptor_cell.bw
Smooth_muscle_cell.bw
Spermatocyte.bw
Stromal_cell.bw
T_cell.bw
Zona_radiata_cell.bw
Drosophila melanogaster
Anterior_enterocyte.bw
Central_nerve_cell.bw
Enteroblast.bw
Epithelial_cell.bw
Fatbody.bw
Fatbody-Hemocyte.bw
Follicle_cell.bw
Follicle_stem_cell.bw
Germline_cell.bw
Glial_cell.bw
Indirect_flight_muscle.bw
Intersegmental_muscle.bw
Jump_muscle.bw
Lamina_cortex_neuron.bw
Male_accessory_gland_main_cell.bw
Malpighian_tubule.bw
Middle_Enterocyte.bw
Oenocyte.bw
Posterior_Enterocyte.bw
Salivary_gland_cell.bw
T4-T5_neuron.bw
Tracheal_cell.bw
Eisenia andrei
Coelomocyte.bw
Cuticle_epidermis_cell.bw
Digestive_gland_cell.bw
Epidermal_cell.bw
Erythrocruorin.bw
Mechanosensory_cell.bw
Muscle_cell.bw
Neuron_cell.bw
Other.bw
Spermatids-Spermatogenesis.bw
Spermatogonia.bw
Sperm_stem_cell.bw

TN5 insertion counts(binarized) for each cCRE in each cell.
Danio rerio
barcodes.txt.gz
features.txt.gz
matrix.mtx.gz
Drosophila melanogaster
barcodes.txt.gz
features.txt.gz
matrix.mtx.gz
Eisenia andrei
barcodes.txt.gz
features.txt.gz
matrix.mtx.gz

Gene accessibility score matrix.
Danio rerio
barcodes.txt.gz
features.txt.gz
matrix.mtx.gz
Drosophila melanogaster
barcodes.txt.gz
features.txt.gz
matrix.mtx.gz
Eisenia andrei
barcodes.txt.gz
features.txt.gz
matrix.mtx.gz

cCRE with cell type specificity in bed format for each main cell type.
Danio rerio
B_cell.bed.gz
Cardiomyocyte.bed.gz
Cone_photoreceptor_cell.bed.gz
Endothelial_cell.bed.gz
Enterocyte.bed.gz
Epithelial_cell.bed.gz
Erythroid.bed.gz
GABAergic_neuron.bed.gz
Granule_cell.bed.gz
Granulosa_cell.bed.gz
Hepatocyte.bed.gz
Intestinal_bulb_cell.bed.gz
Ionocyte.bed.gz
Keratinocyte.bed.gz
Macrophage.bed.gz
Naive_T_cell.bed.gz
Nephron_cell.bed.gz
Neural_cell.bed.gz
Olfactory_neuron.bed.gz
Oligodendrocyte.bed.gz
Pancreatic_cell.bed.gz
Primordial_germ_cell.bed.gz
Radial_glia.bed.gz
Retina_bipolar_cell.bed.gz
Rod_photoreceptor_cell.bed.gz
Smooth_muscle_cell.bed.gz
Spermatocyte.bed.gz
Stromal_cell.bed.gz
T_cell.bed.gz
Zona_radiata_cell.bed.gz
Drosophila melanogaster
Anterior_enterocyte.bed.gz
Central_nerve_cell.bed.gz
Enteroblast.bed.gz
Epithelial_cell.bed.gz
Fatbody.bed.gz
Fatbody-Hemocyte.bed.gz
Follicle_cell.bed.gz
Follicle_stem_cell.bed.gz
Glial_cell.bed.gz
Indirect_flight_muscle.bed.gz
Intersegmental_muscle.bed.gz
Jump_muscle.bed.gz
Lamina_cortex_neuron.bed.gz
Male_accessory_gland_main_cell.bed.gz
Malpighian_tubule.bed.gz
Middle_Enterocyte.bed.gz
Oenocyte.bed.gz
Posterior_Enterocyte.bed.gz
Salivary_gland_cell.bed.gz
T4-T5_neuron.bed.gz
Tracheal_cell.bed.gz
Eisenia andrei
Coelomocyte.bed.gz
Cuticle_epidermis_cell.bed.gz
Digestive_gland_cell.bed.gz
Epidermal_cell.bed.gz
Erythrocruorin.bed.gz
Mechanosensory_cell.bed.gz
Muscle_cell.bed.gz
Neuron_cell.bed.gz
Other.bed.gz
Spermatids-Spermatogenesis.bed.gz
Spermatogonia.bed.gz
Sperm_stem_cell.bed.gz

Metadata for each cell barcode of curated datasets in human, monkey and mouse.
Homo sapiens
human_metadata.txt
Macaca fascicularis
macaca_metadata.txt
Mus musculus
mouse_metadata.txt

Fragment files for each main cell type where each line represents a unique ATAC-seq fragment with cell barcodes information.
Danio rerio
Zebrafish_batch1_female1_fragment.bed.gz
Zebrafish_batch1_female2_fragment.bed.gz
Zebrafish_batch1_male1_fragment.bed.gz
Zebrafish_batch1_male2_fragment.bed.gz
Zebrafish_batch2_female1_fragment.bed.gz
Zebrafish_batch2_female2_fragment.bed.gz
Zebrafish_batch2_male1_fragment.bed.gz
Zebrafish_batch2_male2_fragment.bed.gz
Drosophila melanogaster
Drosophila_female_fragment.bed.gz
Drosophila_male_fragment.bed.gz
Eisenia andrei
Earthworm_1_fragment.bed.gz
Earthworm_2_fragment.bed.gz

Peaks called in bed format for each main cell type.
Danio rerio
B_cell.bed.gz
Cardiomyocyte.bed.gz
Cone_photoreceptor_cell.bed.gz
Endothelial_cell.bed.gz
Enterocyte.bed.gz
Epithelial_cell.bed.gz
Erythroid.bed.gz
GABAergic_neuron.bed.gz
Granule_cell.bed.gz
Granulosa_cell.bed.gz
Hepatocyte.bed.gz
Intestinal_bulb_cell.bed.gz
Ionocyte.bed.gz
Keratinocyte.bed.gz
Macrophage.bed.gz
Naive_T_cell.bed.gz
Nephron_cell.bed.gz
Neural_cell.bed.gz
Olfactory_neuron.bed.gz
Oligodendrocyte.bed.gz
Pancreatic_cell.bed.gz
Primordial_germ_cell.bed.gz
Radial_glia.bed.gz
Retina_bipolar_cell.bed.gz
Rod_photoreceptor_cell.bed.gz
Smooth_muscle_cell.bed.gz
Spermatocyte.bed.gz
Stromal_cell.bed.gz
T_cell.bed.gz
Zona_radiata_cell.bed.gz
Drosophila melanogaster
Anterior_enterocyte.bed.gz
Central_nerve_cell.bed.gz
Enteroblast.bed.gz
Epithelial_cell.bed.gz
Fatbody.bed.gz
Fatbody-Hemocyte.bed.gz
Follicle_cell.bed.gz
Follicle_stem_cell.bed.gz
Glial_cell.bed.gz
Indirect_flight_muscle.bed.gz
Intersegmental_muscle.bed.gz
Jump_muscle.bed.gz
Lamina_cortex_neuron.bed.gz
Male_accessory_gland_main_cell.bed.gz
Malpighian_tubule.bed.gz
Middle_Enterocyte.bed.gz
Oenocyte.bed.gz
Posterior_Enterocyte.bed.gz
Salivary_gland_cell.bed.gz
T4-T5_neuron.bed.gz
Tracheal_cell.bed.gz
Eisenia andrei
Coelomocyte.bed.gz
Cuticle_epidermis_cell.bed.gz
Digestive_gland_cell.bed.gz
Epidermal_cell.bed.gz
Erythrocruorin.bed.gz
Mechanosensory_cell.bed.gz
Muscle_cell.bed.gz
Neuron_cell.bed.gz
Other.bed.gz
Spermatids-Spermatogenesis.bed.gz
Spermatogonia.bed.gz
Sperm_stem_cell.bed.gz

Fragment files for 293T (human) and 3T3 (mouse) cells in two experimental conditions (fixed and fresh cells).
Danio rerio
mixed_species_fixed_HEK293T_fragment.bed.gz
mixed_species_fixed_3T3_fragment.bed.gz
Drosophila melanogaster
mixed_species_fresh_HEK293T_fragment.bed.gz
mixed_species_fresh_3T3_fragment.bed.gz