RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g03030.1 View Network Show in Genome Browser |
| Other Names | Os01g0120400 |
| Description | alanyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 1155213-1158601 Nucleotide Length: 795 |
| Protein-coding | LOC_Os01g03030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os11g19720 LOC_Os01g67510 LOC_Os03g43850 LOC_Os08g19850 LOC_Os02g33500 LOC_Os01g71690 LOC_Os04g57230 LOC_Os12g04980 LOC_Os11g04954 LOC_Os12g31370 LOC_Os01g55900 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR531b osa-miR531a osa-miR531c |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g03030.1 |
| Rice Genome Annotation | LOC_Os01g03030.1 |
| Ricechip | LOC_Os01g03030.1 |
| KEGG | osa:4326034 dosa:Os01t0120400-01 |
| Entrez-Gene | 4326034 |