RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os01g04840.1 View Network Show in Genome Browser
Other Names	Os01g0141300
Description	vacuolar protein sorting-associating protein 4B, putative, expressed
Gene Attributes	Chromosome: Chr1 CDS Coordinates (5'-3'): 2226000-2229526 Nucleotide Length: 1347
Protein-coding	LOC_Os01g04840

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005768	endosome	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Downstream Genes	LOC_Os02g16670 LOC_Os02g24134 LOC_Os07g42632 LOC_Os09g09480 LOC_Os04g48060 LOC_Os07g13270 LOC_Os03g01810 LOC_Os05g44310 LOC_Os03g46390 LOC_Os11g36390 LOC_Os04g11880 More..

miRNA Regulations
miRNAs	osa-miR1425-3p

Database Links
Gramene	LOC_Os01g04840.1
Rice Genome Annotation	LOC_Os01g04840.1
Ricechip	LOC_Os01g04840.1
KEGG	dosa:Os01t0141300-00