RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g05680.1 View Network Show in Genome Browser |
| Other Names | Os01g0150100 |
| Description | geranylgeranyl transferase type-1 subunit beta, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 2713412-2716075 Nucleotide Length: 642 |
| Protein-coding | LOC_Os01g05680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os09g33930 LOC_Os02g04710 LOC_Os11g08569 LOC_Os02g04690 LOC_Os11g18194 LOC_Os11g35710 LOC_Os11g18366 LOC_Os02g18480 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g05680.1 |
| Rice Genome Annotation | LOC_Os01g05680.1 |
| Ricechip | LOC_Os01g05680.1 |
| KEGG | osa:4324517 dosa:Os01t0150100-01 |
| Entrez-Gene | 4324517 |