RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g06510.1 View Network Show in Genome Browser |
| Other Names | Os01g0158500 |
| Description | arginyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 3060994-3066189 Nucleotide Length: 1767 |
| Protein-coding | LOC_Os01g06510 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g03020 |
| Downstream Genes | LOC_Os01g09000 LOC_Os05g08990 LOC_Os10g26050 LOC_Os12g35570 LOC_Os10g22380 LOC_Os09g27420 LOC_Os06g31210 LOC_Os09g21110 LOC_Os01g72890 LOC_Os02g52390 LOC_Os06g43760 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g06510.1 |
| Rice Genome Annotation | LOC_Os01g06510.1 |
| Ricechip | LOC_Os01g06510.1 |
| KEGG | osa:4324056 dosa:Os01t0158500-01 |
| Entrez-Gene | 4324056 |