RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g08540.1 View Network Show in Genome Browser |
| Other Names | Os01g0180600 |
| Description | DNA mismatch repair protein MSH6-2, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 4234514-4244531 Nucleotide Length: 3675 |
| Protein-coding | LOC_Os01g08540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os02g37920 LOC_Os11g19720 LOC_Os03g43850 LOC_Os01g67510 LOC_Os01g72880 LOC_Os03g40100 LOC_Os08g42100 LOC_Os03g51990 LOC_Os09g37930 LOC_Os12g04980 LOC_Os03g14370 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g08540.1 |
| Rice Genome Annotation | LOC_Os01g08540.1 |
| Ricechip | LOC_Os01g08540.1 |
| KEGG | osa:4325353 dosa:Os01t0180600-01 |
| Entrez-Gene | 4325353 |