RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g08560.2 View Network Show in Genome Browser |
| Other Names | Os01g0180800 |
| Description | DnaK family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 4253838-4259626 Nucleotide Length: 2538 |
| Protein-coding | LOC_Os01g08560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g01160 LOC_Os01g06454 LOC_Os01g04380 LOC_Os01g04370 LOC_Os01g04360 LOC_Os01g08310 |
| Downstream Genes | LOC_Os03g44620 LOC_Os02g43930 LOC_Os03g57340 LOC_Os04g46390 LOC_Os06g02620 LOC_Os05g48810 LOC_Os12g07060 LOC_Os01g74580 LOC_Os02g10180 LOC_Os09g32050 LOC_Os05g06440 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 osa-miR396c-5p osa-miR396a-5p osa-miR396b-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g08560.2 |
| Rice Genome Annotation | LOC_Os01g08560.2 |
| Ricechip | LOC_Os01g08560.2 |
| KEGG | osa:4325355 dosa:Os01t0180800-01 |
| Entrez-Gene | 4325355 |