RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g08880.1 View Network Show in Genome Browser |
| Other Names | Os01g0184200 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 4454755-4457084 Nucleotide Length: 669 |
| Protein-coding | LOC_Os01g08880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08860 |
| Downstream Genes | LOC_Os07g42632 LOC_Os06g49140 LOC_Os05g49230 LOC_Os03g60750 LOC_Os09g27270 LOC_Os10g36860 LOC_Os10g15164 LOC_Os01g12950 LOC_Os04g39060 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g08880.1 |
| Rice Genome Annotation | LOC_Os01g08880.1 |
| Ricechip | LOC_Os01g08880.1 |
| KEGG | osa:4325342 dosa:Os01t0184200-01 |
| Entrez-Gene | 4325342 |