RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g09990.1 View Network Show in Genome Browser |
| Other Names | Os01g0196300 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 5201862-5204046 Nucleotide Length: 1320 |
| Protein-coding | LOC_Os01g09990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os02g48670 LOC_Os02g42350 LOC_Os06g11280 LOC_Os06g11240 LOC_Os06g11210 LOC_Os03g02030 LOC_Os09g31190 LOC_Os06g11200 LOC_Os06g11290 LOC_Os04g55720 LOC_Os10g29470 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g09990.1 |
| Rice Genome Annotation | LOC_Os01g09990.1 |
| Ricechip | LOC_Os01g09990.1 |
| KEGG | osa:4327325 dosa:Os01t0196300-01 |
| Entrez-Gene | 4327325 |