RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g11900.1 View Network Show in Genome Browser |
| Other Names | Os01g0218032,Os01g0217900 |
| Description | hhH-GPD superfamily base excision DNA repair protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 6444319-6456076 Nucleotide Length: 5859 |
| Protein-coding | LOC_Os01g11900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os12g10850 LOC_Os05g50290 LOC_Os02g34750 LOC_Os04g42290 LOC_Os03g10220 |
| Reference | |
|---|---|
| PubMed | 22448681 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g11900.1 |
| Rice Genome Annotation | LOC_Os01g11900.1 |
| Ricechip | LOC_Os01g11900.1 |
| KEGG | osa:9271145 dosa:Os01t0218032-01dosa:Os01t0217900-00 |
| Entrez-Gene | 9268704 |